Table 4 Gene set enrichment analysis of genes affected by variants (−log10(p) > 5) from the genome wide associations studies meta-analyses with the traits ‘feather pecks delivered’ (FPD) and the ‘posterior probability of a hen to belong to the extreme feather pecking subgroup’ (pEFP) with clusterProfiler. Results with q-values > 0.25 and at least two gene symbols are listed
Category | ID | Description | q-value | Symbols | Phenotype |
|---|---|---|---|---|---|
KEGG | gga04070 | Phosphatidylinositol signaling system | 0.000156805 | MTMR7/INPP4B/PLCG2/DGKB/DGKE/ITPR1 | FPD |
GO_BP | GO:0006897 | endocytosis | 0.230358006 | CDH13/SH3GL3 | pEFP |
GO_BP | GO:0098657 | import into cell | 0.230358006 | CDH13/SH3GL3 | pEFP |
GO_CC | GO:0005912 | adherens junction | 0.053757065 | CDH13/LPP | pEFP |
GO_CC | GO:0070161 | anchoring junction | 0.053757065 | CDH13/LPP | pEFP |
GO_CC | GO:0098805 | whole membrane | 0.098234855 | CDH13/SH3GL3 | pEFP |
GO_CC | GO:0030054 | cell junction | 0.098234855 | CDH13/LPP | pEFP |