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Table 1 Transcriptome analysis of candidate reference genes

From: Optimal reference genes for gene expression analysis in polyploid of Cyprinus carpio and Carassius auratus

Gene Tissues Cultured cells
Tissues (FPKM) log2FoldChange P value Cells (FPKM) log2FoldChange P value
  2 N 3 N JL4N 3 N/2 N JL4N/2 N 3 N/2 N JL4N/2 N 2 N JL4N SP4N JL4N/2 N SP4N/2 N JL4N/2 N SP4N/2 N
RPS5 849.24 678.32 473.93 −0.32 − 0.84 0.10 0.01 849.24 856.28 667.33 0.01 −0.35 0.93 0.05
RPS18 2068.00 1038.73 1183.93 −0.99 − 0.80 0.32 0.31 1219.08 1758.57 974.64 0.53 −0.32 0.04 0.22
RPL7 911.01 862.83 224.46 −0.08 −2.02 0.68 0.00 911.01 1107.82 754.63 0.28 −0.27 0.14 0.10
RPLP2 238.01 372.57 949.56 0.65 2.00 0.23 0.14 238.01 442.26 153.76 0.89 −0.63 0.00 0.10
RPL13α 982.73 715.70 251.13 −0.46 −1.97 0.15 0.00 1083.97 1434.20 689.13 0.40 −0.65 0.01 0.02
β-actin 578.00 128.05 435.73 −2.17 −0.41 0.14 0.57 1212.30 2115.03 1517.57 0.80 0.32 0.08 0.33
EF1-α 2074.67 2286.30 855.60 0.14 −1.28 0.65 0.02 3693.40 4006.77 1957.93 0.12 −0.92 0.79 0.17
DDX5 68.30 88.85 41.80 0.38 −0.71 0.23 0.26 74.10 90.77 80.90 0.29 0.13 0.08 0.35
β-tubulin 29.80 51.30 33.67 0.78 0.18 0.09 0.71 240.73 273.17 294.77 0.18 0.29 0.64 0.45
hprt1 26.93 47.40 20.93 0.82 −0.36 0.27 0.64 28.27 15.53 19.10 −0.86 −0.57 0.33 0.47
B2M 96.53 263.95 89.73 1.45 −0.11 0.02 0.91 200.10 100.97 95.13 −0.99 −1.07 0.02 0.02
GAPDH 2324.47 1332.75 539.83 −0.80 −2.11 0.32 0.04 0.70 0.93 0.67 0.41 −0.06 0.63 0.93