Skip to main content

Table 1 Response of transcription factors to waterlogging stress

From: Transcriptomic and anatomic profiling reveal the germination process of different wheat varieties in response to waterlogging stress

Category Gene_id Cluster Log2 (Fold change) Swissprot_name Swissprot_description
W72_ZM22 vs C72_ZM22 W72_BN207 vs C72_BN207 W72_BN607 vs C72_BN607
WRKY TraesCS1A02G197400 C2 −0.13 −0.38 −1.55 WRKY35 WRKY transcription factor 35
TraesCS3A02G347500 C2 −0.4 − 0.57 −1.83 WRKY24 WRKY transcription factor WRKY24
TraesCS6A02G146900 C2 −0.99 −1.07 − 2.16 WRKY71 WRKY transcription factor WRKY71
TraesCS6B02G175100 C2 −0.98 −1.4 − 2.14 WRKY71 WRKY transcription factor WRKY71
TraesCS2B02G410400 C2 −0.13 − 0.61 −1.51 WRKY12 WRKY transcription factor 12
TraesCS3D02G113300 C7 −2.2 −0.49 0.15 WRKY72 WRKY transcription factor 72
MYB TraesCS1D02G084400 C2 0.04 −0.65 −1.68 MYB86 Transcription factor MYB86
TraesCS7D02G514800 C7 −3.69 −1.34 −0.03 MYB44 Transcription factor MYB44
TraesCS2A02G157600 C7 −1.46 −0.46 0.19 MYB306 Myb-related protein 306
TraesCS2A02G116100 C7 0.7 0.78 1.03 EFM Myb family transcription factor EFM
ERF TraesCS2A02G288000 C7 −0.06 0.32 1.12 ERF114 Ethylene-responsive transcription factor ERF114
TraesCS1B02G392300 C7 −0.41 0.73 1.95 AP2/ERF AP2/ERF and B3 domain-containing protein
TraesCS7A02G264100 C7 −0.2 0.39 1.08 ABR1 Ethylene-responsive transcription factor ABR1
MADS-box TraesCS5B02G115100 C2 0.17 0.06 −2.07 MADS13 MADS-box transcription factor 13
TraesCS4D02G346300 C7 0.07 0.96 1.16 MADS51 MADS-box transcription factor 51
ZIP TraesCS2A02G424200 C2 0.14 −0.34 −1.26 ZIP3 Zinc transporter 3
TraesCS1B02G306500 C2 −0.14 −0.34 −1.36 ZIP5 Zinc transporter 5
BHLH TraesCS2D02G347200 C7 −1.1 −0.56 1.62 BHLH113 Transcription factor bHLH113
TraesCS5D02G411600 C7 −2.61 0.24 1.16 BHLH84 Transcription factor bHLH84
IAA TraesCS7A02G322000 C2 −0.74 −0.99 −1.55 IAA25 Auxin-responsive protein IAA25
ARF TraesCS3B02G190100 C2 −0.1 −0.64 −1.34 ARF1 Auxin response factor 1
HSFA TraesCS2D02G211400 C7 −1.72 −0.81 0.53 HSFA3 Heat stress transcription factor A-3
NAC TraesCS2A02G102000 C7 0.24 0.69 1.24 NAM-B1 NAC transcription factor NAM-B1
  1. NOTE: C72_ZM22, ZM22 after 72 h of germination under the control treatment; W72_ZM22: ZM22 after 72 h of germination under the waterlogging treatment; C72_BN207, BN207 after 72 h of germination under the control treatment; W72_BN207, BN207 after 72 h of germination under the waterlogging treatment; C72_BN607, BN607 after 72 h of germination under the control treatment; and W72_BN607, BN607 after 72 h of germination under the waterlogging treatment