Genome-wide characterization of copy number variations in the host genome in genetic resistance to Marek’s disease using next generation sequencing

Table 3 A summary of the chicken CNVRs identified in this study and previous studies

Study	Platform	Number of CNVRs	Total length (Mb)	Concordant number with our study
Griffin et al., 2008 [28]	NimbleGen 385 K	20	2.84	1
Skinner et al., 2009 [29]	NimbleGen 385 K	15	2.91	2
Wang et al., 2010 [30]	NimbleGen 385 K	96	16.14	4
Volker et al., 2010 [31]	NimbleGen 385 K	25	5.29	1
Wang et al., 2012 [32, 33]	Agilent 400 K	130	3.34	4
Crooijmans et al., 2013 [34]	Aglilent 244 K	1553	61.67	57
Luo et al., 2013 [20]	Agilent 400 K	33	1.92	4
Tian et al., 2013 [35]	Agilent 400 K	308	10.81	16
Zhou et al., 2014 [15]	Illumina 60 K	137	27.32	7
Yi et al., 2014 [25]	Illumina HiSeq 2000	7530	88.12	306
Yan et al., 2015 [21]	Illumina HiSeq 2000	5680	28.94	228
Xu et al., 2017 [22]	Affymetix 600 K	170	0.83	15
This study	Illumina HiSeq 2000	585	88.16	–

ISSN: 2730-6844