Genetic mapping of physiological traits associated with terminal stage drought tolerance in rice

BMC Genomic Data

Table 5 Details of polymorphic SSR markers obtained from bulk segregant analysis detected in the QTL mapping

Marker name	Chrom#	position	Forward primer	Reverse primer	Repeat motif	Annl temp
RM495	1	2.8	AATCCAAGGTGCAGAGATGG	CAACGATGACGAACACAACC	(CTG)7	55 °C
RM6703	1	139.1	CAGCAAACCAAACCAAGCC	GCGAGGAGGAGGAGAAAAAG	(TAC)12	55 °C
RM3825	1	143.7	AAAGCCCCCAAAAGCAGTAC	GTGAAACTCTGGGGTGTTCG	(GA)21	55 °C
RM327	2	72.6	CTACTCCTCTGTCCCTCCTCTC	CCAGCTAGACACAATCGAGC	(CAT)11(CTT)5	55 °C
RM341	2	94.4	CAAGAAACCTCAATCCGAGC	CTCCTCCCGATCCCAATC	(CTT)20	55 °C
RM263	2	127.5	CCCAGGCTAGCTCATGAACC	GCTACGTTTGAGCTACCACG	(CT)34	55 °C
RM22	3	7.2	GGTTTGGGAGCCCATAATCT	CTGGGCTTCTTTCACTCGTC	(GA)22	55 °C
RM517	3	30.3	GGCTTACTGGCTTCGATTTG	CGTCTCCTTTGGTTAGTGCC	(CT)15	55 °C
RM527	6	61.2	GGCTCGATCTAGAAAATCCG	TTGCACAGGTTGCGATAGAG	(GA)17	55 °C
RM3	6	92.4	ACACTGTAGCGGCCACTG	CCTCCACTGCTCCACATCTT	(GA)2GG(GA)25	55 °C
RM337	8	0.1	GTAGGAAAGGAAGGGCAGAG	CGATAGATAGCTAGATGTGGCC	(CTT)4–19-(CTT)8	55 °C
RM72	8	60.9	CCGGCGATAAAACAATGAG	GCATCGGTCCTAACTAAGGG	(TAT)5C(ATT)15	55 °C
RM316	9	1.8	CTAGTTGGGCATACGATGGC	ACGCTTATATGTTACGTCAAC	(GT)8-(TG)9 (TTTG)4 (TG)4	55 °C
RM257	9	79.7	CAGTTCCGAGCAAGAGTACTC	GGATCGGACGTGGCATATG	(CT)24	55 °C
RM271	10	59.4	TCAGATCTACAATTCCATCC	TCGGTGAGACCTAGAGAGCC	(GA)15	55 °C
RM171	10	92.8	AACGCGAGGACACGTACTTAC	ACGAGATACGTACGCCTTTG	(GATG)5	55 °C
RM484	10	102.9	TCTCCCTCCTCACCATTGTC	TGCTGCCCTCTCTCTCTCTC	(AT)9	55 °C
RM20A	12	0	ATCTTGTCCCTGCAGGTCAT	GAAACAGAGGCACATTTCATTG	(ATT)14	55 °C
RM511	12	59.8	CTTCGATCCGGT GACGAC	AACGAAAGCGAAGCTGTCTC	(GAC)7	55 °C
RM309	12	74.5	GTAGATCACGCACCTTTCTGG	AGAAGGCCTCCGGTGAAG	(GT)13	55 °C
RM519	12	94.8	AGAGAGCCCCTAAATTTCCG	AGGTACGCTCACCTGTGGAC	(AAG)8	55 °C

ISSN: 2730-6844