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Fig. 5 | BMC Genetics

Fig. 5

From: Identification and genetic analysis of qCL1.2, a novel allele of the “green revolution” gene SD1 from wild rice (Oryza rufipogon) that enhances plant height

Fig. 5

Haplotype analysis of the SD1 gene in rice. a Major haplotypes (haplotypes carried by more than five accessions) of the SD1 coding region in the whole population based on non-synonymous SNPs data. Different colors at nucleotides 299 and 1019 represent japonica and indica. H_3 contains qCL1.2, the SNPs in blue and red rectangles represent FNPs for plant height. b Major haplotypes (haplotypes carried by more than 10 accessions) of the SD1 promoter region. SNPs in orange differentiate between japonica and indica, SNPs in yellow are specific to other accessions

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