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Table 1 Biological Process (BP) found using DAVID 6.8. Table 1a shows nine BP using all 192 Differentially Expressed (DE genes) with six BP associated with bone formation. Table 1b shows six BP using only 129 downregulated genes in the affected broilers. In bold are the BP that were the same in both analyses

From: RNA-seq reveals downregulated osteochondral genes potentially related to tibia bacterial chondronecrosis with osteomyelitis in broilers

Category

Term

Pathways

Count

FDR

Table 1a.

GOTERM_BP_ALL

GO:0061448

connective tissue development

12

1.89E-05

GOTERM_BP_ALL

GO:0051216

cartilage development

11

2.46E-05

GOTERM_BP_ALL

GO:0001501

skeletal system development

15

3.81E-05

GOTERM_BP_ALL

GO:0009887

organ morphogenesis

17

6.34E-04

GOTERM_BP_ALL

GO:0048731

system development

35

0.00825838

GOTERM_BP_ALL

GO:0048705

skeletal system morphogenesis

9

0.008659783

 GOTERM_BP_ALL

GO:0007275

multicellular organism development

36

0.019958649

GOTERM_BP_ALL

GO:0048856

anatomical structure development

39

0.026663753

GOTERM_BP_ALL

GO:0044707

single-multicellular organism process

40

0.031747676

Table 1b.

GOTERM_BP_ALL

GO:0001501

skeletal system development

15

2.31567E-07

GOTERM_BP_ALL

GO:0061448

connective tissue development

12

3.26095E-07

GOTERM_BP_ALL

GO:0051216

cartilage development

11

6.13948E-07

GOTERM_BP_ALL

GO:0048705

skeletal system morphogenesis

9

0.000509513

GOTERM_BP_ALL

GO:0009887

organ morphogenesis

14

0.001261476

GOTERM_BP_ALL

GO:0048731

system development

26

0.049749525