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Table 2 Genotype data shows an association of LRRTM4 to ascites syndrome in female REL line birds

From: Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing

  

All

 

Male

 

Female

Genotype

n

Sus

Res

P-val.

n

Sus

Res

P-val.

n

Sus

Res

P-val.

AG

246

45.6

54.4

0.0083

101

41.6

58.4

0.24

113

47.8

52.2

0.047

RR

426

31.0

69.0

0.13

192

27.7

72.3

0.21

157

32.7

67.3

0.83

GA

197

34.5

65.5

1.76

86

36.5

63.5

1.65

81

29.6

70.4

0.52

  1. Data is based on SNP genotypes using a qPCR assay. Genotype is the composite of the two SNPs on chromosome 28 assayed with P1 and P2 (Table 4) (bases: 4,405,679 and 4,405,681). For each genotype the percentage of each phenotype (Sus=susceptible; Res=resistant) is presented along with the adjusted P-value (P-val.) for All samples, and each gender. Discrepancies in totals result from missing gender data for some samples. Phenotypes are Sus (susceptible) or Res (resistant)