Skip to main content

Table 1 Potential QTL regions for ascites syndrome based on WGR in the REL line

From: Identification and validation of quantitative trait loci for ascites syndrome in broiler chickens using whole genome resequencing

 

Mbp

Res-Sus SNP frequency

 

Chr

Start

Stop

Size

Male

Female

Genes within Region

1

48.18

48.41

0.23

30%

30%

APLD,GPRC5A,HEBP1,FAM234B,GSG1, EMP1,MIR6581

1

170.483

170.53

0.05

40%

0%

CAB39L

1

175.68

175.87

0.19

-25%

30%

PDS5B

1

182.31

182.46

0.15

40%

20%

AASDHPPT,KBTBD3,MSANTD4

1

183.65

183.95

0.30

35%

35%

DCUN1D5,MMP13,MMP10,MMP3,MMP7,BIRC2

2

22.86

23.03

0.17

50%

0%

SAMD9L,HEPACAM2,VP50

2

34.47

34.61

0.14

40%

-20%

PLCL2

2

91.85

91.92

0.07

50%

0%

CNDP2,FAM69C

2

95.14

95.22

0.08

-30%

0%

CDH19

2

122.75

122.83

0.08

45%

-25%

CA2

2

126.97

127.09

0.12

40%

20%

CPQ**

3

37.27

37.36

0.09

-30%

40%

RYR2

3

48.98

49.00

0.02

-20%

30%

RMND1

3

50.41

50.44

0.03

40%

0%

SCAF8

3

100.70

101.10

0.40

0%

-30%

OSR1

4

36.72

36.90

0.18

40%

0%

GRID2

5

13.26

13.29

0.03

0%

50%

DDTNFR23, CARS

5

25.44

25.47

0.04

-50%

25%

SPTBN5

6

28.82

28.87

0.05

0%

40%

ABLIM1

10

6.49

6.54

0.05

40%

30%

TJP1

14

1.48

1.66

0.18

0%

30%

LMTK2,BHLHA15,TECPR1,BRI3,BAIAP2L1, NPTX2

20

9.06

9.10

0.04

0%

-40%

PXDNL,PCMTD2

22

4.40

4.48

0.08

60%

20%

LRRTM4

27

7.85

7.98

0.13

-30%

0%

RAMP2,WNK4,COA3,BECN1,PSME3,AOC3, G6PC,PTGES3L,RPL27,IFI35,VAT1,RND2

28

0.59

0.63

0.05

-25%

0%

TIMM44,HNRNPM

Z

18.60

18.73

0.13

-25%

-50%

PDE4D

Z

19.10

19.50

0.40

25%

50%

ZSWIM6,KIF2A

Z

33.87

33.90

0.03

25%

25%

SLC24A2

  1. Regions are listed by Chromosome (Chr) and Megabase pair (Mbp) Start, Stop and Size, in the chicken genome GRCg6a assembly. Res-Sus SNP frequency is the difference in the approximate maximum frequency difference for the non-reference SNP between the phenotypes of the indicated genders. Positive Res-Sus SNP frequency difference indicates the non-reference SNPs are associated with resistance, negative values indicate association with susceptibility. **Gga2 region previously verified as a QTL [34]