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Table 2 Estimates between herds genetic differences (P – values) a

From: Assessing the power of principal components and wright’s fixation index analyzes applied to reveal the genome-wide genetic differences between herds of Holstein cows

Herd_Herd

PC 1

PC 1 Pruned data

PC 3

Summed 10 eigenvectors

Summed 20 eigenvectors

Summed 100 eigenvectors

Summed 100 eigenvectors Pruned dat

FstP-values

1_2

0.0031

0.0034

1.6E-05

4.2e-07

1.5e-11

3.0e-15

1.e-16

4.1e-49

1_3

0.0444

0.0460

0.0017

0.0002

1.3e-09

9.8e-18

4.1e-19

3.3e-47

1_4

0.0029

0.0029

0.0598

5.6e-05

4.6e-07

2.8e-10

4.7e-08

3.54e-32

1_5

0.8517

0.8652

0.0007

0.0289

6.6e-11

7.2e-17

5.0e-21

3.4e-40

1_6

0.6751

0.6748

0.6948

0.0504

7.81e-05

1.0e-13

6.4e-11

1.35e-38

1_7

0.0190

0.0202

0.1230

2.95e-07

3.1e-10

2.4e-25

1.4e-22

1.8e-54

1_8

0.0370

0.0381

0.0551

0.0137

9.5e-06

4.2e-08

2.5e-12

4.99e-37

1_9

0.2776

0.2854

0.0002

0.0056

0.0001

1.2e-10

5.4e-17

2.98e-26

1_10

0.0141

0.0146

0.0856

0.1030

0.0001

1.2e-12

1.1e-15

3.7e-35

1_11

0.0012

0.0013

0.0019

5.23e-05

7.4e-08

7.7e-14

3.0e-14

1.5e-45

1_12

0.0075

0.0079

0.0053

1.085e-5

1.9e-10

3.4e-18

7.0e-19

3.2e-34

1_13

0.4578

0.4554

0.6325

0.0141

0.0001

4.7e-19

1.0e-14

2.5e-40

2_3

0.1539

0.1561

0.0798

3.34e-06

6.7e-06

2.0e-14

1.4e-14

7.7e-42

2_4

1.0e-09

1.3e-09

1.8e-08

6.52e-17

9.9e-21

3.3e-24

6.0e-22

1.2e-54

2_5

0.0033

0.0034

0.7395

0.0001

1.6e-06

3.3e-18

1.2e-25

5.2e-59

2_6

0.0007

0.0007

6.1E-06

8.58e-7

8.2e-10

2.2e-16

3.8e-17

4.0e-58

2_7

0.2893

0.2868

0.0002

1.48e-14

1.9e-17

8.9e-26

4.7e-26

3.6e-60

2_8

0.4154

0.4179

0.0194

0.0002

8.9e-06

2.3e-11

2.5e-12

3.9e-28

2_9

0.0189

0.0194

0.7035

0.0156

0.0198

2.7e-11

5.1e-13

3.2e-20

2_10

0.8281

0.8312

0.0149

0.0119

0.0063

2.2e-12

1.7e-19

2.3e-41

2_11

0.6182

0.6189

0.1155

0.0020

1.7e-05

5.7e-06

4.7e-08

2.4e-27

2_12

0.8521

0.8502

0.1206

0.0003

0.00074

6.9e-11

1.1e-11

7.3e-20

2_13

2.9e-05

3.3e-05

0.0001

6.82e-15

1.6e-18

3.6e-26

7.7e-30

6.1e-49

3_4

1.0e-08

1.21e-08

2.4e-06

6.19e-13

1.80e-16

1.5e-21

1.2e-16

1.7e-51

3_5

0.0486

0.0484

0.2529

0.0063

0.0019

2.9e-13

7.1E-14

2.6e-26

3_6

0.0109

0.0115

0.0006

0.0004

6.4e-06

5.0e-12

7.9E-09

3.6e-40

3_7

0.6314

0.6428

0.0235

2.31e-05

3.7e-10

4.6e-22

8.9e-20

9.7e-48

3_8

0.6296

0.6306

0.3359

0.0615

0.0036

9.6e-06

2.0e-4

2.7e-19

3_9

0.2662

0.2661

0.2269

0.0089

0.01045

4.7e-10

4.3e-09

5.1e-16

3_10

0.2472

0.2479

0.2537

0.0052

0.00216

5.6e-10

9.6e-13

2.2e-25

3_11

0.0469

0.0475

0.8965

0.0088

2.9e-05

5.6e-10

3.7e-14

2.3e-39

3_12

0.2241

0.2272

0.9923

8.49e-06

8.9e-08

1.5e-12

1.9e-10

1.6e-19

3_13

0.0009

0.0009

0.0092

1.91e-05

3.6e-07

3.4e-23

1.5e-18

6.1e-49

4_5

0.0006

0.0007

5.0e-06

2.48e-07

2.8e-11

8.2e-17

2.5e-16

1.7e-51

4_6

0.0099

0.0100

0.1422

0.0949

0.1570

2.8e-12

2.5e-06

4.6e-23

4_7

4.4e-10

5.4e-10

0.0006

4.86e-14

9.7e-16

1.4e-30

1.5e-24

5.5e-45

4_8

1.37e-7

1.5e-07

0.0005

4.08e-09

1.0e-11

3.5e-15

8.4e-12

4.8e-46

4_9

3.0e-06

3.5e-06

5.2e-07

1.73e-11

2.9e-15

5.0e-24

3.3e-20

2.0e-44

4_10

2.8e-08

3.1e-08

0.0014

6.38e-09

1.7e-10

1.1e-19

6.0e-16

1.2e-41

4_11

2.9e-10

3.3e-10

4.7e-06

5.80e-16

2.1e-14

5.5e-18

7.7e-15

7.8e-50

4_12

5.9e-09

6.9e-09

2.2e-05

4.39e-11

4.1e-16

4.8e-26

1.6e-20

6.1e-53

4_13

0.0058

0.0061

0.0209

5.90e-06

3.2e-05

1.6e-22

2.1e-15

1.1e-39

5_6

0.5239

0.5355

0.0003

0.0013

1.1e-05

5.1e-15

9.1e-15

1.4e-33

5_7

0.0156

0.0160

0.0045

2.77e-06

4.4e-09

4.1e-24

3.3e-28

1.1e-40

5_8

0.0371

0.0371

0.0891

0.0008

0.0001

2.4e-11

7.2e-14

3.9e-37

5_9

0.3430

0.3429

0.9873

0.0755

5.5e-06

2.8e-15

1.9e-20

2.3e-42

5_10

0.0108

0.0109

0.0722

0.1244

0.02997

3.3e-13

6.4e-18

3.7e-36

5_11

0.0009

0.0009

0.3148

2.33e-07

1.3e-11

3.7e-14

4.9E-21

5.6e-56

5_12

0.0069

0.0070

0.3121

0.0024

5.9e-05

7.4e-17

3.2e-17

3.6e-40

5_13

0.3061

0.3144

0.0027

8.21e-05

4.4e-07

4.7e-20

5.3e-20

1.3e-54

6_7

0.0036

0.0038

0.0538

1.88e-08

9.8e-11

1.1e-27

9.4e-22

4.1e-43

6_8

0.0111

0.0114

0.0267

0.0020

2.8e-05

2.1e-12

2.1e-09

8.7e-35

6_9

0.1111

0.1154

8.6e-05

0.0010

7.3e-07

4.4e-17

1.0e-17

2.1e-47

6_10

0.0037

0.0038

0.0447

0.0015

0.0005

6.5e-17

3.2e-16

8.7e-39

6_11

0.0002

0.0002

0.0007

2.85e-06

2.5e-05

2.4e-12

3.9e-12

5.6e-45

6_12

0.0018

0.0019

0.0022

0.0001

2.7e-06

1.8e-17

2.9e-13

6.5e-34

6_13

0.7950

0.7922

0.3939

0.0002

0.00089

3.6e-14

1.8e-12

5.2e-40

7_8

0.9093

0.8995

0.4063

0.0002

1.9e-07

1.5e-15

1.0e-16

1.7e-38

7_9

0.1137

0.1171

0.0027

2.58e-09

3.9e-14

2.1e-27

1.2E-32

1.1e-57

7_10

0.3626

0.3556

0.4961

0.0005

3.0e-06

1.9e-25

4.5e-23

3.3e-37

7_11

0.0869

0.0854

0.0177

7.31e-12

1.5e-17

3.5e-24

5.2e-24

9.9e-46

7_12

0.3751

0.3723

0.0564

2.10e-05

4.6e-07

5.6e-25

2.2e-22

7.7e-33

7_13

0.0001

0.0001

0.3316

4.05e-13

2.2e-14

1.3e-33

4.4e-23

7.4e-47

8_9

0.1610

0.1612

0.0680

0.0061

0.0007

1.4e-06

2.0e-06

2.6e-26

8_10

0.5629

0.5626

0.8878

0.1035

0.0038

8.2e-12

7.7e-14

6.1e-34

8_11

0.1946

0.1956

0.3000

0.0718

0.0011

3.2e-07

4.4E-11

1.4e-25

8_12

0.5285

0.5321

0.4049

5.78e-06

2.2e-07

5.5e-10

5.6E-11

1.5e-33

8_13

0.0011

0.0011

0.1463

0.0061

9.3e-05

1.3e-14

6.2E-14

4.2e-42

9_10

0.0490

0.0493

0.0562

0.0362

0.0027

6.1e-13

2.1E-17

5.2e-40

9_11

0.0049

0.0050

0.2908

0.0234

0.0001

3.0e-09

6.0E-13

1.2e-30

9_12

0.0356

0.0363

0.2817

0.0001

1.2e-06

4.2e-15

8.5E-18

2.9e-30

9_13

0.0301

0.0316

0.0011

1.54e-08

6.4e-11

3.0e-22

1.2E-27

8.6e-59

10_11

0.4825

0.4852

0.2214

0.0009

2.1e-05

3.1e-17

1.7E-20

1.5e-33

10_12

0.9646

0.9658

0.3312

0.0108

0.0331

2.3e-12

2.1E-20

6.7e-38

10_13

0.0002

0.0002

0.2061

5.82e-06

6.7e-07

4.6e-25

1.7E-25

4.9e-43

11_12

0.4991

0.4976

0.9038

1.02e-07

1.3e-11

3.4e-18

2.8E-15

7.6e-47

11_13

5.5e-06

6.0e-06

0.0096

1.98e-09

2.2e-10

6.0e-16

6.0E-15

1.8e-38

12_13

9.1e-05

9.9e-05

0.0207

2.12e-14

5.6e-18

8.9e-26

2.4E-22

3.5e-53

  1. a complete data except for special marks in column names