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Table 1 Estimates of Fst values for complete and pruned data

From: Assessing the power of principal components and wright’s fixation index analyzes applied to reveal the genome-wide genetic differences between herds of Holstein cows

Herd

1

2

3

4

5

6

7

8

9

10

11

12

13

1

 

0.005a

0.005

0.006

0.006

0.004

0.006

0.004

0.003

0.005

0.005

0.005

0.004

2

0.006b

 

0.004

0.012

0.006

0.006

0.006

0.003

0.002

0.004

0.003

0.003

0.007

3

0.005

0.003

 

0.009

0.003

0.004

0.005

0.002

0.002

0.003

0.004

0.003

0.005

4

0.006

0.012

0.009

 

0.009

0.004

0.011

0.008

0.009

0.011

0.011

0.012

0.006

5

0.006

0.005

0.003

0.009

 

0.005

0.006

0.004

0.004

0.004

0.006

0.005

0.005

6

0.004

0.006

0.003

0.004

0.005

 

0.007

0.004

0.005

0.006

0.005

0.005

0.004

7

0.006

0.006

0.005

0.010

0.006

0.006

 

0.004

0.006

0.006

0.007

0.005

0.007

8

0.005

0.003

0.002

0.009

0.004

0.004

0.005

 

0.003

0.004

0.003

0.004

0.004

9

0.004

0.002

0.002

0.009

0.004

0.005

0.006

0.002

 

0.004

0.003

0.003

0.006

10

0.005

0.005

0.004

0.011

0.004

0.006

0.006

0.004

0.004

 

0.005

0.004

0.007

11

0.006

0.003

0.004

0.011

0.006

0.005

0.007

0.003

0.003

0.005

 

0.005

0.006

12

0.005

0.002

0.003

0.011

0.004

0.005

0.005

0.003

0.003

0.004

0.004

 

0.008

13

0.005

0.007

0.005

0.006

0.005

0.004

0.007

0.004

0.005

0.007

0.006

0.007

 
  1. a Fst values for complete data are above the diagonal and Fst values for pruned data are below the diagonal
  2. b Increased Fst values for pruned data compared to complete data are in bold and decreased Fst values are in bold Italic. Fst values in bold are significantly different from those values in the complete data in range of P = 0.05–0.006 exept of the herds pair 4 and 12 which was insignificant)