TY - STD TI - Wood PJ. Understanding immunology. Pearson Education. 2006. ID - ref1 ER - TY - BOOK AU - Janeway, C. A. AU - Travers, P. AU - Walport, M. AU - Shlomchik, M. PY - 2001 DA - 2001// TI - Immunobiology: the immune system in health and disease, vol. 2 PB - Garland Pub CY - New York ID - Janeway2001 ER - TY - JOUR AU - Corsaro, C. AU - Scalia, M. AU - Leotta, N. AU - Mondio, F. AU - Sichel, G. PY - 2000 DA - 2000// TI - Characterisation of Kupffer cells in some Amphibia JO - J Anat VL - 196 UR - https://doi.org/10.1046/j.1469-7580.2000.19620249.x DO - 10.1046/j.1469-7580.2000.19620249.x ID - Corsaro2000 ER - TY - JOUR AU - Horton, J. AU - Horton, T. AU - Dzialo, R. AU - Gravawr, I. AU - Minter, R. AU - Ritchie, P. AU - Ganluna, L. AU - Watson, M. AU - Caopet, M. PY - 1998 DA - 1998// TI - T-cell and natural killer cell development in thymectomized Xenopus JO - Immunol Rev VL - 166 UR - https://doi.org/10.1111/j.1600-065X.1998.tb01267.x DO - 10.1111/j.1600-065X.1998.tb01267.x ID - Horton1998 ER - TY - JOUR AU - Apponyi, M. A. AU - Pukala, T. L. AU - Brinkworth, C. S. AU - Maselli, V. M. AU - Bowie, J. H. AU - Tyler, M. J. AU - Booker, G. W. AU - Wallace, J. C. AU - Carver, J. A. AU - Separovic, F. PY - 2004 DA - 2004// TI - Host-defence peptides of Australian anurans: structure, mechanism of action and evolutionary significance JO - Peptides VL - 25 UR - https://doi.org/10.1016/j.peptides.2004.03.006 DO - 10.1016/j.peptides.2004.03.006 ID - Apponyi2004 ER - TY - JOUR AU - Duda, T. F. AU - Vanhoye, D. AU - Nicolas, P. PY - 2002 DA - 2002// TI - Roles of diversifying selection and coordinated evolution in the evolution of amphibian antimicrobial peptides JO - Mol Biol Evol VL - 19 UR - https://doi.org/10.1093/oxfordjournals.molbev.a004143 DO - 10.1093/oxfordjournals.molbev.a004143 ID - Duda2002 ER - TY - JOUR AU - Tennessen, J. A. PY - 2005 DA - 2005// TI - Molecular evolution of animal antimicrobial peptides: widespread moderate positive selection JO - J Evol Biol VL - 18 UR - https://doi.org/10.1111/j.1420-9101.2005.00925.x DO - 10.1111/j.1420-9101.2005.00925.x ID - Tennessen2005 ER - TY - JOUR AU - Brown, K. L. AU - Hancock, R. E. W. PY - 2006 DA - 2006// TI - Cationic host defense (antimicrobial) peptides JO - Curr Opin Immunol VL - 18 UR - https://doi.org/10.1016/j.coi.2005.11.004 DO - 10.1016/j.coi.2005.11.004 ID - Brown2006 ER - TY - JOUR AU - Groenink, J. AU - Walgreen-Weterings, E. AU - Hof, W. AU - Veerman, E. C. I. AU - Amerongen, A. V. N. PY - 1999 DA - 1999// TI - Cationic amphipathic peptides, derived from bovine and human lactoferrins, with antimicrobial activity against oral pathogens JO - FEMS Microbiol Lett VL - 179 UR - https://doi.org/10.1111/j.1574-6968.1999.tb08730.x DO - 10.1111/j.1574-6968.1999.tb08730.x ID - Groenink1999 ER - TY - JOUR AU - Huang, Y. B. AU - Huang, J. F. AU - Chen, Y. X. PY - 2010 DA - 2010// TI - Alpha-helical cationic antimicrobial peptides: relationships of structure and function JO - Protein Cell VL - 1 UR - https://doi.org/10.1007/s13238-010-0004-3 DO - 10.1007/s13238-010-0004-3 ID - Huang2010 ER - TY - JOUR AU - Gosset, C. C. AU - Nascimento, J. AU - Auge, M. -. T. AU - Bierne, N. PY - 2014 DA - 2014// TI - Evidence for adaptation from standing genetic variation on an antimicrobial peptide gene in the mussel Mytilus edulis JO - Mol Ecol VL - 23 UR - https://doi.org/10.1111/mec.12784 DO - 10.1111/mec.12784 ID - Gosset2014 ER - TY - STD TI - Halldorsdottir K, Arnason E. Trans-species polymorphism at antimicrobial innate immunity cathelicidin genes of Atlantic cod and related species. Peerj. 2015;3. https://doi.org/10.7717/peerj.976. ID - ref12 ER - TY - JOUR AU - Robertson, L. S. AU - Cornman, R. S. PY - 2014 DA - 2014// TI - Transcriptome resources for the frogs Lithobates clamitans and Pseudacris regilla, emphasizing antimicrobial peptides and conserved loci for phylogenetics JO - Mol Ecol Resour VL - 14 UR - https://doi.org/10.1111/1755-0998.12164 DO - 10.1111/1755-0998.12164 ID - Robertson2014 ER - TY - STD TI - Muncaster S, Kraakman K, Gibbons O, Mensink K, Forlenza M, Jacobson G, Bird S: doi:https://doi.org/10.1016/j.dci.2017.04.014. ID - ref14 ER - TY - JOUR AU - Cagliani, R. AU - Fumagalli, M. AU - Riva, S. AU - Pozzoli, U. AU - Comi, G. P. AU - Menozzi, G. AU - Bresolin, N. AU - Sironi, M. PY - 2008 DA - 2008// TI - The signature of long-standing balancing selection at the human defensin beta-1 promoter JO - Genome Biol VL - 9 UR - https://doi.org/10.1186/gb-2008-9-9-r143 DO - 10.1186/gb-2008-9-9-r143 ID - Cagliani2008 ER - TY - JOUR AU - Vanhoye, D. AU - Bruston, F. AU - Nicolas, P. AU - Amiche, M. PY - 2003 DA - 2003// TI - Antimicrobial peptides from hylid and ranin frogs originated from a 150-million-year-old ancestral precursor with a conserved signal peptide but a hypermutable antimicrobial domain JO - Eur J Biochem VL - 270 UR - https://doi.org/10.1046/j.1432-1033.2003.03584.x DO - 10.1046/j.1432-1033.2003.03584.x ID - Vanhoye2003 ER - TY - JOUR AU - Tennessen, J. A. AU - Blouin, M. S. PY - 2008 DA - 2008// TI - Balancing selection at a frog antimicrobial peptide locus: fluctuating immune effector alleles? JO - Mol Biol Evol VL - 25 UR - https://doi.org/10.1093/molbev/msn208 DO - 10.1093/molbev/msn208 ID - Tennessen2008 ER - TY - JOUR AU - Bahar, A. AU - Ren, D. PY - 2013 DA - 2013// TI - Antimicrobial peptides JO - Pharmaceuticals VL - 6 UR - https://doi.org/10.3390/ph6121543 DO - 10.3390/ph6121543 ID - Bahar2013 ER - TY - JOUR AU - Woodhams, D. C. AU - Voyles, J. AU - Lips, K. R. AU - Carey, C. AU - Rollins-Smith, L. A. PY - 2006 DA - 2006// TI - Predicted disease susceptibility in a panamanian amphibian assemblage based on skin peptide defenses JO - J Wildl Dis VL - 42 UR - https://doi.org/10.7589/0090-3558-42.2.207 DO - 10.7589/0090-3558-42.2.207 ID - Woodhams2006 ER - TY - JOUR AU - Woodhams, D. C. AU - Rollins-Smith, L. A. AU - Carey, C. AU - Reinert, L. AU - Tyler, M. J. AU - Alford, R. A. PY - 2006 DA - 2006// TI - Population trends associated with skin peptide defenses against chytridiomycosis in Australian frogs JO - Oecologia VL - 146 UR - https://doi.org/10.1007/s00442-005-0228-8 DO - 10.1007/s00442-005-0228-8 ID - Woodhams2006 ER - TY - JOUR AU - Scheele, B. C. AU - Pasmans, F. AU - Skerratt, L. F. AU - Berger, L. AU - Martel, A. AU - Beukema, W. AU - Acevedo, A. A. AU - Burrowes, P. A. AU - Carvalho, T. AU - Catenazzi, A. PY - 2019 DA - 2019// TI - Amphibian fungal panzootic causes catastrophic and ongoing loss of biodiversity JO - Science VL - 363 UR - https://doi.org/10.1126/science.aav0379 DO - 10.1126/science.aav0379 ID - Scheele2019 ER - TY - JOUR AU - Chapman, J. R. AU - Hill, T. AU - Unckless, R. L. PY - 2019 DA - 2019// TI - Balancing selection drives the maintenance of genetic variation in Drosophila antimicrobial peptides JO - Genome Biol Evol VL - 11 UR - https://doi.org/10.1093/gbe/evz191 DO - 10.1093/gbe/evz191 ID - Chapman2019 ER - TY - JOUR AU - Conlon, J. M. AU - Kolodziejek, J. AU - Nowotny, N. PY - 2004 DA - 2004// TI - Antimicrobial peptides from ranid frogs: taxonomic and phylogenetic markers and a potential source of new therapeutic agents JO - BBA-Proteins Proteomics VL - 1696 UR - https://doi.org/10.1016/j.bbapap.2003.09.004 DO - 10.1016/j.bbapap.2003.09.004 ID - Conlon2004 ER - TY - JOUR AU - Marcocci, M. E. AU - Amatore, D. AU - Villa, S. AU - Casciaro, B. AU - Aimola, P. AU - Franci, G. AU - Grieco, P. AU - Galdiero, M. AU - Palamara, A. T. AU - Mangoni, M. L. PY - 2018 DA - 2018// TI - The amphibian antimicrobial peptide Temporin B inhibits in vitro herpes simplex virus 1 infection JO - Antimicrob Agents Chemother VL - 62 UR - https://doi.org/10.1128/AAC.02367-17 DO - 10.1128/AAC.02367-17 ID - Marcocci2018 ER - TY - JOUR AU - Selsted, M. E. AU - Ouellette, A. J. PY - 2005 DA - 2005// TI - Mammalian defensins in the antimicrobial immune response JO - Nat Immunol VL - 6 UR - https://doi.org/10.1038/ni1206 DO - 10.1038/ni1206 ID - Selsted2005 ER - TY - JOUR AU - Hellgren, O. AU - Sheldon, B. C. PY - 2011 DA - 2011// TI - Locus-specific protocol for nine different innate immune genes (antimicrobial peptides: beta-defensins) across passerine bird species reveals within-species coding variation and a case of trans-species polymorphisms JO - Mol Ecol Resour VL - 11 UR - https://doi.org/10.1111/j.1755-0998.2011.02995.x DO - 10.1111/j.1755-0998.2011.02995.x ID - Hellgren2011 ER - TY - JOUR AU - Woodhams, D. C. AU - Kenyon, N. AU - Bell, S. C. AU - Alford, R. A. AU - Chen, S. AU - Billheimer, D. AU - Shyr, Y. AU - Rollins-Smith, L. A. PY - 2010 DA - 2010// TI - Adaptations of skin peptide defences and possible response to the amphibian chytrid fungus in populations of Australian green-eyed treefrogs, Litoria genimaculata JO - Divers Distributions VL - 16 UR - https://doi.org/10.1111/j.1472-4642.2010.00666.x DO - 10.1111/j.1472-4642.2010.00666.x ID - Woodhams2010 ER - TY - JOUR AU - Mina, A. E. AU - Ponti, A. K. AU - Woodcraft, N. L. AU - Johnson, E. E. AU - Saporito, R. A. PY - 2015 DA - 2015// TI - Variation in alkaloid-based microbial defenses of the dendrobatid poison frog Oophaga pumilio JO - Chemoecology VL - 25 UR - https://doi.org/10.1007/s00049-015-0186-5 DO - 10.1007/s00049-015-0186-5 ID - Mina2015 ER - TY - JOUR AU - Davis, L. R. AU - Klonoski, K. AU - Rutschow, H. L. AU - Wijk, K. J. AU - Sun, Q. AU - Haribal, M. M. AU - Saporito, R. A. AU - Vega, A. AU - Rosenblum, E. B. AU - Zamudio, K. R. PY - 2016 DA - 2016// TI - Host defense skin peptides vary with color pattern in the highly polymorphic red-eyed Treefrog JO - Front Ecol Evol VL - 4 UR - https://doi.org/10.3389/fevo.2016.00097 DO - 10.3389/fevo.2016.00097 ID - Davis2016 ER - TY - JOUR AU - Lazzaro, B. P. PY - 2008 DA - 2008// TI - Natural selection on the Drosophila antimicrobial immune system JO - Curr Opin Microbiol VL - 11 UR - https://doi.org/10.1016/j.mib.2008.05.001 DO - 10.1016/j.mib.2008.05.001 ID - Lazzaro2008 ER - TY - JOUR AU - Tennessen, J. A. AU - Blouin, M. S. PY - 2007 DA - 2007// TI - Selection for antimicrobial peptide diversity in frogs leads to gene duplication and low allelic variation JO - J MoEvol VL - 65 ID - Tennessen2007 ER - TY - JOUR AU - Bijlsma, R. AU - Loeschcke, V. PY - 2012 DA - 2012// TI - Genetic erosion impedes adaptive responses to stressful environments JO - Evol Appl VL - 5 UR - https://doi.org/10.1111/j.1752-4571.2011.00214.x DO - 10.1111/j.1752-4571.2011.00214.x ID - Bijlsma2012 ER - TY - JOUR AU - Hewitt, G. M. PY - 1999 DA - 1999// TI - Post-glacial re-colonization of European biota JO - Biol J Linn Soc VL - 68 UR - https://doi.org/10.1111/j.1095-8312.1999.tb01160.x DO - 10.1111/j.1095-8312.1999.tb01160.x ID - Hewitt1999 ER - TY - JOUR AU - Hampe, A. AU - Petit, R. J. PY - 2005 DA - 2005// TI - Conserving biodiversity under climate change: the rear edge matters JO - Ecol Lett VL - 8 UR - https://doi.org/10.1111/j.1461-0248.2005.00739.x DO - 10.1111/j.1461-0248.2005.00739.x ID - Hampe2005 ER - TY - JOUR AU - Strand, A. E. AU - Williams, L. M. AU - Oleksiak, M. F. AU - Sotka, E. E. PY - 2012 DA - 2012// TI - Can diversifying selection be distinguished from history in geographic clines? A population genomic study of killifish (Fundulus heteroclitus) JO - PLoS One VL - 7 UR - https://doi.org/10.1371/journal.pone.0045138 DO - 10.1371/journal.pone.0045138 ID - Strand2012 ER - TY - JOUR AU - Lafontaine, G. AU - Napier, J. D. AU - Petit, R. J. AU - Hu, F. S. PY - 2018 DA - 2018// TI - Invoking adaptation to decipher the genetic legacy of past climate change JO - Ecology VL - 99 UR - https://doi.org/10.1002/ecy.2382 DO - 10.1002/ecy.2382 ID - Lafontaine2018 ER - TY - JOUR AU - Palo, J. U. AU - Schmeller, D. S. AU - Laurila, A. AU - Primmer, C. R. AU - Kuzmin, S. L. AU - Merila, J. PY - 2004 DA - 2004// TI - High degree of population subdivision in a widespread amphibian JO - Mol Ecol VL - 13 UR - https://doi.org/10.1111/j.1365-294X.2004.02269.x DO - 10.1111/j.1365-294X.2004.02269.x ID - Palo2004 ER - TY - STD TI - Jansen van Rensburg A. The genomics of adaptation to climate across latitude and elevation in the European common frog: University of Zurich; 2018. https://www.zora.uzh.ch/id/eprint/153943/1/153943.pdf. UR - https://www.zora.uzh.ch/id/eprint/153943/1/153943.pdf ID - ref38 ER - TY - JOUR AU - Knopp, T. AU - Merila, J. PY - 2009 DA - 2009// TI - The postglacial recolonization of northern Europe by Rana arvalis as revealed by microsatellite and mitochondrial DNA analyses JO - Heredity VL - 102 UR - https://doi.org/10.1038/hdy.2008.91 DO - 10.1038/hdy.2008.91 ID - Knopp2009 ER - TY - JOUR AU - Cortázar-Chinarro, M. AU - Lattenkamp, E. Z. AU - Meyer-Lucht, Y. AU - Luquet, E. AU - Laurila, A. AU - Höglund, J. PY - 2017 DA - 2017// TI - Drift, selection, or migration? Processes affecting genetic differentiation and variation along a latitudinal gradient in an amphibian JO - BMC Evol Biol VL - 17 UR - https://doi.org/10.1186/s12862-017-1022-z DO - 10.1186/s12862-017-1022-z ID - Cortázar-Chinarro2017 ER - TY - JOUR AU - Kirkpatrick, M. AU - Barton, N. H. PY - 1997 DA - 1997// TI - Evolution of a species' range JO - Am Nat VL - 150 UR - https://doi.org/10.1086/286054 DO - 10.1086/286054 ID - Kirkpatrick1997 ER - TY - JOUR AU - Johansson, M. AU - Primmer, C. R. AU - Merila, J. PY - 2006 DA - 2006// TI - History vs. current demography: explaining the genetic population structure of the common frog (Rana temporaria) JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.02866.x DO - 10.1111/j.1365-294X.2006.02866.x ID - Johansson2006 ER - TY - STD TI - Rödin‐Mörch P, Luquet E, Meyer‐Lucht Y, Richter‐Boix A, Höglund J, Laurila A. Latitudinal divergence in a widespread amphibian: Contrasting patterns of neutral and adaptive genomic variation. Mol Ecol. 2019;28(12):2996-3011. ID - ref43 ER - TY - JOUR AU - Eckert, C. G. AU - Samis, K. E. AU - Lougheed, S. C. PY - 2008 DA - 2008// TI - Genetic variation across species' geographical ranges: the central-marginal hypothesis and beyond JO - Mol Ecol VL - 17 UR - https://doi.org/10.1111/j.1365-294X.2007.03659.x DO - 10.1111/j.1365-294X.2007.03659.x ID - Eckert2008 ER - TY - JOUR AU - Lighten, J. AU - Oosterhout, C. AU - Paterson, I. G. AU - McMullan, M. AU - Bentzen, P. PY - 2014 DA - 2014// TI - Ultra-deep Illumina sequencing accurately identifies MHC class IIb alleles and provides evidence for copy number variation in the guppy (Poecilia reticulata) JO - Mol Ecol Res VL - 14 UR - https://doi.org/10.1111/1755-0998.12225 DO - 10.1111/1755-0998.12225 ID - Lighten2014 ER - TY - JOUR AU - Yang, Z. PY - 2007 DA - 2007// TI - PAML 4: phylogenetic analysis by maximum likelihood JO - Mol Biol Evol VL - 24 UR - https://doi.org/10.1093/molbev/msm088 DO - 10.1093/molbev/msm088 ID - Yang2007 ER - TY - JOUR AU - Cortazar-Chinarro, M. AU - Meyer-Lucht, Y. AU - Laurila, A. AU - Höglund, J. PY - 2018 DA - 2018// TI - Signatures of historical selection on MHC reveal different selection patterns in the moor frog (Rana arvalis) JO - Immunogenetics VL - 70 UR - https://doi.org/10.1007/s00251-017-1051-1 DO - 10.1007/s00251-017-1051-1 ID - Cortazar-Chinarro2018 ER - TY - STD TI - van Rensburg AJ, Cortazar-Chinarro M, Laurila A, Van Buskirk J. Adaptive genomic variation associated with environmental gradients along a latitudinal cline in Rana temporaria. 2018. bioRxiv:427872. ID - ref48 ER - TY - STD TI - Lucht Y, Luquet E, Jóhannesdóttir F, Rödin‐Mörch P, Quintela M, Richter‐Boix A, ...Laurila A. Genetic basis of amphibian larval development along a latitudinal gradient: Gene diversity, selection and links with phenotypic variation in transcription factor C/EBP‐1. Mol Ecol. 2019;28(11):2786–801. ID - ref49 ER - TY - JOUR AU - Schemske, D. W. AU - Mittelbach, G. G. AU - Cornell, H. V. AU - Sobel, J. M. AU - Roy, K. PY - 2009 DA - 2009// TI - Is there a latitudinal gradient in the importance of biotic interactions? JO - Annu Rev Ecol Evol Syst VL - 40 UR - https://doi.org/10.1146/annurev.ecolsys.39.110707.173430 DO - 10.1146/annurev.ecolsys.39.110707.173430 ID - Schemske2009 ER - TY - JOUR AU - Anstett, D. N. AU - Ahern, J. R. AU - Johnson, M. T. AU - Salminen, J. P. PY - 2018 DA - 2018// TI - Testing for latitudinal gradients in defense at the macroevolutionary scale JO - Evolution VL - 72 UR - https://doi.org/10.1111/evo.13579 DO - 10.1111/evo.13579 ID - Anstett2018 ER - TY - JOUR AU - Guernier, V. AU - Hochberg, M. E. AU - Guegan, J. F. PY - 2004 DA - 2004// TI - Ecology drives the worldwide distribution of human diseases JO - PLoS Biol VL - 2 UR - https://doi.org/10.1371/journal.pbio.0020141 DO - 10.1371/journal.pbio.0020141 ID - Guernier2004 ER - TY - JOUR AU - Morand, S. AU - Walther, B. A. PY - 2018 DA - 2018// TI - Individualistic values are related to an increase in the outbreaks of infectious diseases and zoonotic diseases JO - Sci Rep VL - 8 UR - https://doi.org/10.1038/s41598-017-18427-2 DO - 10.1038/s41598-017-18427-2 ID - Morand2018 ER - TY - JOUR AU - Somero, G. N. PY - 2010 DA - 2010// TI - The physiology of climate change: how potentials for acclimatization and genetic adaptation will determine 'winners' and 'losers' JO - J Exp Biol VL - 213 UR - https://doi.org/10.1242/jeb.037473 DO - 10.1242/jeb.037473 ID - Somero2010 ER - TY - JOUR AU - Hoglund, J. AU - Wengstrom, A. AU - Rogell, B. AU - Meyer-Lucht, Y. PY - 2015 DA - 2015// TI - Low MHC variation in isolated island populations of the Natterjack toad (Bufo calamita) JO - Con Gen VL - 16 UR - https://doi.org/10.1007/s10592-015-0715-3 DO - 10.1007/s10592-015-0715-3 ID - Hoglund2015 ER - TY - JOUR AU - Skerratt, L. F. AU - Berger, L. AU - Speare, R. AU - Cashins, S. AU - McDonald, K. R. AU - Phillott, A. D. AU - Hines, H. B. AU - Kenyon, N. PY - 2007 DA - 2007// TI - Spread of chytridiomycosis has caused the rapid global decline and extinction of frogs JO - Ecohealth VL - 4 UR - https://doi.org/10.1007/s10393-007-0093-5 DO - 10.1007/s10393-007-0093-5 ID - Skerratt2007 ER - TY - JOUR AU - Rödder, D. AU - Kielgast, J. AU - Bielby, J. AU - Schmidtlein, S. AU - Bosch, J. AU - Garner, T. W. AU - Veith, M. AU - Walker, S. AU - Fisher, M. AU - Lötters, S. PY - 2009 DA - 2009// TI - Global amphibian extinction risk assessment for the panzootic chytrid fungus JO - Diversity VL - 1 UR - https://doi.org/10.3390/d1010052 DO - 10.3390/d1010052 ID - Rödder2009 ER - TY - JOUR AU - O’hanlon, S. J. AU - Rieux, A. AU - Farrer, R. A. AU - Rosa, G. M. AU - Waldman, B. AU - Bataille, A. AU - Kosch, T. A. AU - Murray, K. A. AU - Brankovics, B. AU - Fumagalli, M. PY - 2018 DA - 2018// TI - Recent Asian origin of chytrid fungi causing global amphibian declines JO - Science VL - 360 UR - https://doi.org/10.1126/science.aar1965 DO - 10.1126/science.aar1965 ID - O’hanlon2018 ER - TY - JOUR AU - Karvemo, S. AU - Meurling, S. AU - Berger, D. AU - Hoglund, J. AU - Laurila, A. PY - 2018 DA - 2018// TI - Effects of host species and environmental factors on the prevalence of Batrachochytrium dendrobatidis in northern Europe JO - PLoS One VL - 13 UR - https://doi.org/10.1371/journal.pone.0199852 DO - 10.1371/journal.pone.0199852 ID - Karvemo2018 ER - TY - STD TI - Meurling S. The response in native wildlife to an invading pathogen: Swedish amphibians and Batracho-chytrium dendrobatidis. PhD theis: Uppsala University; 2019. http://www.diva-portal.org/smash/record.jsf?pid=diva2%3A1369696&dswid=-1094. UR - http://www.diva-portal.org/smash/record.jsf?pid=diva2%3A1369696&dswid=-1094 ID - ref60 ER - TY - JOUR AU - Patrelle, C. AU - Miaud, C. AU - Cristina, N. AU - Kullberg, P. AU - Merilä, J. PY - 2012 DA - 2012// TI - Chytrid fungus screening in a population of common frogs from northern Finland JO - Herpetol Rev VL - 43 ID - Patrelle2012 ER - TY - BOOK AU - Esposito, E. PY - 2018 DA - 2018// TI - Analysis of antimicrobial peptide efficacy against chytridiomycosis from skin secretions of Columbia spotted frogs (Lithobates luteiventris). PhD Thesis ID - Esposito2018 ER - TY - JOUR AU - Flechas, S. V. AU - Acosta-González, A. AU - Escobar, L. A. AU - Kueneman, J. G. AU - Sánchez-Quitian, Z. A. AU - Parra-Giraldo, C. M. AU - Rollins-Smith, L. A. AU - Reinert, L. K. AU - Vredenburg, V. T. AU - Amézquita, A. PY - 2019 DA - 2019// TI - Microbiota and skin defense peptides may facilitate coexistence of two sympatric Andean frog species with a lethal pathogen JO - ISME J VL - 13 UR - https://doi.org/10.1038/s41396-018-0284-9 DO - 10.1038/s41396-018-0284-9 ID - Flechas2019 ER - TY - JOUR AU - Rollins-Smith, L. A. AU - Doersam, J. K. AU - Longcore, J. E. AU - Taylor, S. K. AU - Shamblin, J. C. AU - Carey, C. AU - Zasloff, M. A. PY - 2002 DA - 2002// TI - Antimicrobial peptide defenses against pathogens associated with global amphibian declines JO - Dev Comp Immunol VL - 26 UR - https://doi.org/10.1016/S0145-305X(01)00041-6 DO - 10.1016/S0145-305X(01)00041-6 ID - Rollins-Smith2002 ER - TY - JOUR AU - Rollins-Smith, L. A. AU - Conlon, J. M. PY - 2005 DA - 2005// TI - Antimicrobial peptide defenses against chytridiomycosis, an emerging infectious disease of amphibian populations JO - Dev Comp Immunol VL - 29 UR - https://doi.org/10.1016/j.dci.2004.11.004 DO - 10.1016/j.dci.2004.11.004 ID - Rollins-Smith2005 ER - TY - JOUR AU - Maxwell, A. AU - Morrison, G. AU - Dorin, J. PY - 2003 DA - 2003// TI - Rapid sequence divergence in mammalian β-defensins by adaptive evolution JO - Mol Immunol VL - 40 UR - https://doi.org/10.1016/S0161-5890(03)00160-3 DO - 10.1016/S0161-5890(03)00160-3 ID - Maxwell2003 ER - TY - JOUR AU - Zhang, J. PY - 2003 DA - 2003// TI - Evolution by gene duplication: an update JO - Trends Ecol Evol VL - 18 UR - https://doi.org/10.1016/S0169-5347(03)00033-8 DO - 10.1016/S0169-5347(03)00033-8 ID - Zhang2003 ER - TY - JOUR AU - Burri, R. AU - Salamin, N. AU - Studer, R. A. AU - Roulin, A. AU - Fumagalli, L. PY - 2010 DA - 2010// TI - Adaptive divergence of ancient gene duplicates in the avian MHC class II beta JO - Mol Biol Evol VL - 27 UR - https://doi.org/10.1093/molbev/msq120 DO - 10.1093/molbev/msq120 ID - Burri2010 ER - TY - JOUR AU - Bracamonte, S. E. AU - Baltazar-Soares, M. AU - Eizaguirre, C. PY - 2015 DA - 2015// TI - Characterization of MHC class II genes in the critically endangered European eel (Anguilla anguilla) JO - Conserv Genet Resour VL - 7 UR - https://doi.org/10.1007/s12686-015-0501-z DO - 10.1007/s12686-015-0501-z ID - Bracamonte2015 ER - TY - STD TI - Talarico L, Babik W, Marta S, Mattoccia M. Genetic drift shaped MHC IIB diversity of an endangered anuran species within the Italian glacial refugium. J Zool. 2019;307(1):61-70. ID - ref70 ER - TY - JOUR AU - Fan, W. M. AU - Kasahara, M. AU - Gutknecht, J. AU - Klein, D. AU - Mayer, W. E. AU - Jonker, M. AU - Klein, J. PY - 1989 DA - 1989// TI - Shared class-II MHC polymorphisms between humans and chimpanzees JO - Hum Immunol VL - 26 UR - https://doi.org/10.1016/0198-8859(89)90096-7 DO - 10.1016/0198-8859(89)90096-7 ID - Fan1989 ER - TY - JOUR AU - Strand, T. AU - Westerdahl, H. AU - Hoeglund, J. AU - Alatalo, R. V. AU - Siitari, H. PY - 2007 DA - 2007// TI - The Mhc class II of the black grouse (Tetrao tetrix) consists of low numbers of B and Y genes with variable diversity and expression JO - Immunogenetics VL - 59 UR - https://doi.org/10.1007/s00251-007-0234-6 DO - 10.1007/s00251-007-0234-6 ID - Strand2007 ER - TY - STD TI - Eimes JA, Townsend AK, Sepil I, Nishiumi I, Satta Y. Patterns of evolution of MHC class II genes of crows (Corvus) suggest trans-species polymorphism. PeerJ. 2015;3:e853. https://doi.org/10.7717/peerj.853. ID - ref73 ER - TY - JOUR AU - Veith, M. AU - Kosuch, J. AU - Vences, M. PY - 2003 DA - 2003// TI - Climatic oscillations triggered post-Messinian speciation of Western Palearctic brown frogs (Amphibia, Ranidae) JO - Mol Phylogenet Evol VL - 26 UR - https://doi.org/10.1016/S1055-7903(02)00324-X DO - 10.1016/S1055-7903(02)00324-X ID - Veith2003 ER - TY - JOUR AU - Yuan, Z. -. Y. AU - Zhou, W. -. W. AU - Chen, X. AU - Poyarkov, N. A. AU - Chen, H. -. M. AU - Jang-Liaw, N. -. H. AU - Chou, W. -. H. AU - Matzke, N. J. AU - Iizuka, K. AU - Min, M. -. S. PY - 2016 DA - 2016// TI - Spatiotemporal diversification of the true frogs (genus Rana): a historical framework for a widely studied group of model organisms JO - Syst Biol VL - 65 UR - https://doi.org/10.1093/sysbio/syw055 DO - 10.1093/sysbio/syw055 ID - Yuan2016 ER - TY - JOUR AU - Hughes, A. L. AU - Yeager, M. PY - 1997 DA - 1997// TI - Coordinated amino acid changes in the evolution of mammalian defensins JO - J Mol Evol VL - 44 UR - https://doi.org/10.1007/PL00006191 DO - 10.1007/PL00006191 ID - Hughes1997 ER - TY - JOUR AU - Sommer, S. PY - 2005 DA - 2005// TI - The importance of immune gene variability (MHC) in evolutionary ecology and conservation JO - Front Zool VL - 2 UR - https://doi.org/10.1186/1742-9994-2-1 DO - 10.1186/1742-9994-2-1 ID - Sommer2005 ER - TY - JOUR AU - Piertney, S. B. AU - Oliver, M. K. PY - 2006 DA - 2006// TI - The evolutionary ecology of the major histocompatibility complex JO - Heredity VL - 96 UR - https://doi.org/10.1038/sj.hdy.6800724 DO - 10.1038/sj.hdy.6800724 ID - Piertney2006 ER - TY - JOUR AU - Spurgin, L. G. AU - Richardson, D. S. PY - 2010 DA - 2010// TI - How pathogens drive genetic diversity: MHC, mechanisms and misunderstandings JO - Proc R Soc Lond B Biol Sci VL - 277 UR - https://doi.org/10.1098/rspb.2009.2084 DO - 10.1098/rspb.2009.2084 ID - Spurgin2010 ER - TY - JOUR AU - Sanchez-Mazas, A. AU - Cerny, V. AU - Di, D. AU - Buhler, S. AU - Podgorna, E. AU - Chevallier, E. AU - Brunet, L. AU - Weber, S. AU - Kervaire, B. AU - Testi, M. PY - 2017 DA - 2017// TI - The HLA-B landscape of Africa: signatures of pathogen-driven selection and molecular identification of candidate alleles to malaria protection JO - Mol Ecol VL - 26 UR - https://doi.org/10.1111/mec.14366 DO - 10.1111/mec.14366 ID - Sanchez-Mazas2017 ER - TY - BOOK AU - Fog, K. AU - Schmedes, A. AU - Rosenørn de Lasson, D. PY - 1997 DA - 1997// TI - Nordens padder og krybdyr PB - GEC Gads Forlag CY - København ID - Fog1997 ER - TY - JOUR AU - Gosner, K. L. PY - 1960 DA - 1960// TI - A simplified table for staging anuran embryos and larvae with notes on identification JO - Herpetologica VL - 16 ID - Gosner1960 ER - TY - JOUR AU - Simmaco, M. AU - Mignogna, G. AU - Canofeni, S. AU - Miele, R. AU - Mangoni, M. L. AU - Barra, D. PY - 1996 DA - 1996// TI - Temporins, antimicrobial peptides from the European red frog Rana temporaria JO - Eur J Biochem VL - 242 UR - https://doi.org/10.1111/j.1432-1033.1996.0788r.x DO - 10.1111/j.1432-1033.1996.0788r.x ID - Simmaco1996 ER - TY - JOUR AU - Koyama, T. AU - Conlon, J. M. AU - Iwamuro, S. PY - 2011 DA - 2011// TI - Molecular Cloning and Characterization of cDNAs Encoding Biosynthetic Precursors for the Antimicrobial Peptides Japonicin-1Ja, Japonicin-2Ja, and Temporin-1Ja in the Japanese Brown Frog, Rana japonica JO - Zool Sci VL - 28 UR - https://doi.org/10.2108/zsj.28.339 DO - 10.2108/zsj.28.339 ID - Koyama2011 ER - TY - JOUR AU - Chen, T. B. AU - Zhou, M. AU - Rao, P. F. AU - Walker, B. AU - Shaw, C. PY - 2006 DA - 2006// TI - The Chinese bamboo leaf odorous frog (Rana Odorrana versabilis) and north American Rana frogs share the same families of skin antimicrobial peptides JO - Peptides VL - 27 UR - https://doi.org/10.1016/j.peptides.2006.02.009 DO - 10.1016/j.peptides.2006.02.009 ID - Chen2006 ER - TY - JOUR AU - Zhou, M. AU - Wang, L. AU - Owens, D. E. AU - Chen, T. B. AU - Walker, B. AU - Shaw, C. PY - 2007 DA - 2007// TI - Rapid identification of precursor cDNAs encoding five structural classes of antimicrobial peptides from pickerel frog (Rana palustris) skin secretion by single step "shotgun" cloning JO - Peptides VL - 28 UR - https://doi.org/10.1016/j.peptides.2007.07.019 DO - 10.1016/j.peptides.2007.07.019 ID - Zhou2007 ER - TY - JOUR AU - Magoč, T. AU - Salzberg, S. L. PY - 2011 DA - 2011// TI - FLASH: fast length adjustment of short reads to improve genome assemblies JO - Bioinformatics VL - 27 UR - https://doi.org/10.1093/bioinformatics/btr507 DO - 10.1093/bioinformatics/btr507 ID - Magoč2011 ER - TY - JOUR AU - Stuglik, M. T. AU - Radwan, J. AU - Babik, W. PY - 2011 DA - 2011// TI - jMHC: software assistant for multilocus genotyping of gene families using next-generation amplicon sequencing JO - Mol Ecol Res VL - 11 UR - https://doi.org/10.1111/j.1755-0998.2011.02997.x DO - 10.1111/j.1755-0998.2011.02997.x ID - Stuglik2011 ER - TY - JOUR AU - Babik, W. AU - Pabijan, M. AU - Arntzen, J. W. AU - Cogalniceanu, D. AU - Durka, W. AU - Radwan, J. PY - 2009 DA - 2009// TI - Long-term survival of a urodele amphibian despite depleted major histocompatibility complex variation JO - Mol Ecol VL - 18 UR - https://doi.org/10.1111/j.1365-294X.2008.04057.x DO - 10.1111/j.1365-294X.2008.04057.x ID - Babik2009 ER - TY - STD TI - Galan M, Guivier E, Caraux G, et al. A 454 multiplex sequencing method for rapid and reliable genotyping of highly polymorphic genes in large-scale studies. BMC Genomics. 2010;11:296. https://doi.org/10.1186/1471-2164-11-296. ID - ref90 ER - TY - JOUR AU - Lighten, J. AU - Oosterhout, C. AU - Bentzen, P. PY - 2014 DA - 2014// TI - Critical review of NGS analyses for de novo genotyping multigene families JO - Mol Ecol VL - 23 UR - https://doi.org/10.1111/mec.12843 DO - 10.1111/mec.12843 ID - Lighten2014 ER - TY - JOUR AU - Kumar, S. AU - Stecher, G. AU - Tamura, K. PY - 2016 DA - 2016// TI - MEGA7: molecular evolutionary genetics analysis version 7.0 for bigger datasets JO - Mol Biol Evol VL - 33 UR - https://doi.org/10.1093/molbev/msw054 DO - 10.1093/molbev/msw054 ID - Kumar2016 ER - TY - STD TI - Klein J. Many Questions (and Almost No Answers) about the Phylogenetic Origin of the Major Histocompatibility Complex. In: Hildemann WH, Benedict AA. (eds) Immunologic Phylogeny. Advances in Experimental Medicine and Biology, vol 64. Boston: Springer; 1975. ID - ref93 ER - TY - JOUR AU - Excoffier, L. AU - Lischer, H. E. L. PY - 2010 DA - 2010// TI - Arlequin suite ver 3.5: a new series of programs to perform population genetics analyses under Linux and windows JO - Mol Ecol Resour VL - 10 UR - https://doi.org/10.1111/j.1755-0998.2010.02847.x DO - 10.1111/j.1755-0998.2010.02847.x ID - Excoffier2010 ER - TY - JOUR AU - Bates, D. AU - Sarkar, D. AU - Bates, M. D. AU - Matrix, L. PY - 2007 DA - 2007// TI - The lme4 package JO - R package version VL - 2 ID - Bates2007 ER - TY - JOUR AU - Leigh, J. W. AU - Bryant, D. PY - 2015 DA - 2015// TI - popart: full-feature software for haplotype network construction JO - Methods Ecol Evol VL - 6 UR - https://doi.org/10.1111/2041-210X.12410 DO - 10.1111/2041-210X.12410 ID - Leigh2015 ER - TY - JOUR AU - Ginestet, C. PY - 2011 DA - 2011// TI - ggplot2: elegant graphics for data analysis JO - J R Stat Soc Ser A-Stat Soc VL - 174 UR - https://doi.org/10.1111/j.1467-985X.2010.00676_9.x DO - 10.1111/j.1467-985X.2010.00676_9.x ID - Ginestet2011 ER - TY - JOUR AU - Librado, P. AU - Rozas, J. PY - 2009 DA - 2009// TI - DnaSP v5: a software for comprehensive analysis of DNA polymorphism data JO - Bioinformatics VL - 25 UR - https://doi.org/10.1093/bioinformatics/btp187 DO - 10.1093/bioinformatics/btp187 ID - Librado2009 ER - TY - JOUR AU - Pond, S. L. K. AU - Frost, S. D. W. AU - Muse, S. V. PY - 2005 DA - 2005// TI - HyPhy: hypothesis testing using phylogenies JO - Bioinformatics VL - 21 UR - https://doi.org/10.1093/bioinformatics/bti079 DO - 10.1093/bioinformatics/bti079 ID - Pond2005 ER - TY - JOUR AU - Weaver, S. AU - Shank, S. D. AU - Spielman, S. J. AU - Li, M. AU - Muse, S. V. AU - Kosakovsky Pond, S. L. PY - 2018 DA - 2018// TI - Datamonkey 2.0: a modern web application for characterizing selective and other evolutionary processes JO - Mol Biol Evol VL - 35 UR - https://doi.org/10.1093/molbev/msx335 DO - 10.1093/molbev/msx335 ID - Weaver2018 ER -