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Table 2 Candidate SNPs that were significantly associated with a trait in more than 50% of environments based on t-tests

From: Functional mutation allele mining of plant architecture and yield-related agronomic traits and characterization of their effects in wheat

TraitMarkerChrPosPPVEp value of t-test
2015C2015H2016C2016H2017HAc-Env
PHAX-1099009892B679,577,7166.80E-050.086394E-062E-064E-061E-054E-051E-06
PHAX-1115634353B374,142,0317.47E-040.078950.450.0260.0020.0034E-040.005
PHAX-1104093823D603,468,7066.77E-040.076830.1271E-033E-057E-043E-062E-04
PHAX-1099684865D414,844,2442.66E-040.091430.0023E-046E-071E-042E-077E-06
PHAX-1089308665D417,084,0716.87E-040.080450.0023E-041E-062E-043E-071E-05
PHAX-1095008655D418,685,2242.66E-040.091430.0023E-046E-071E-042E-077E-06
PHAX-1111189545D419,371,8416.98E-040.080270.0024E-041E-062E-043E-071E-05
PHAX-1089077985D419,809,5082.14E-040.093976E-044E-057E-082E-055E-081E-06
MTAX-1096554473B165,293,3693.69E-040.094620.9350.3230.0350.0218E-040.018
MTAX-1105363823B746,271,3735.54E-040.08390.1460.0310.0020.0026E-040.002
MTAX-1102832203D604,711,0797.01E-040.087810.8080.4190.0180.0025E-050.006
MTAX-1090415014A601,871,8028.21E-040.061930.5010.0530.0230.0229E-050.005
MTAX-1094464706B476,960,3961.13E-040.102280.8350.2610.0230.0020.0360.067
MTAX-894258617D63,824,3134.87E-040.092045E-051E-050.0022E-049E-053E-05
ETAX-1111962153B271,864,8874.56E-060.113940.0990.0890.0490.0060.0120.004
ETAX-1109214803B323,802,2174.99E-040.085310.0520.0490.0170.0910.0040.002
ETAX-1110297283B602,229,4308.00E-040.082080.0340.0630.0120.0640.0020.001
ETAX-1104670265A692,057,8385.37E-040.083260.0160.1960.0180.220.0350.007
ETAX-1115563617B34,297,3114.41E-040.083140.0140.0970.0140.0280.0820.003
ETAX-894258617D63,824,3132.41E-040.097774E-059E-073E-040.0021E-047E-06
FLAAX-1099009892B679,577,7167.82E-040.061750.0090.0074E-071E-06 1E-06
TGWAX-1093260753B67,251,9553.22E-050.115940.0187E-043E-040.0130.1257E-04
TGWAX-1099472805D409,567,5595.46E-040.082250.0020.0210.0010.0130.0451E-03
GNSAX-1095854772A695,514,6861.15E-040.10446  2E-050.045 4E-04
GNSAX-1094382153B817,259,8163.57E-060.14869  0.0020.031 0.003
NSLAX-1095854772A695,514,6868.74E-040.073980.7230.0630.0090.004 0.006
SDAX-1103717062A734,684,3635.07E-040.079589E-071E-055E-072E-06 5E-09
SDAX-1109605883B255,902,4815.50E-040.077650.6650.1540.0070.021 0.03
SDAX-1111723563B282,202,0135.40E-040.077660.5850.0980.0050.014 0.02
SDAX-1116891083B301,074,0695.37E-040.077740.5720.0990.010.024 0.03
SDAX-1089176916A73,473,7075.90E-040.079350.8110.0140.0050.192 0.061
SDAX-1104859377A671,726,4655.30E-040.077880.6130.0190.0170.099 0.039
  1. PVE (%): phenotypic variation explained by the SNP
  2. PH plant height, MT maximum tiller numbers, ET effective tiller numbers, FLA flag leaf angle, TGW thousand grain weight, GNS grain numbers per spike, NSL spikelet number per spike, SD spikelet density