Table 3 Allelic variation of TaGS3-7A. The position was accounted from ATG (1)
position | location | Changzhi 6406 | Sankecun | Shannong 7859 | Kangdingxiaomai | Xingyi 4 | Youmangbaifu | Dongnong 101 | Gansu 96 | Fuzhuang 30 | Bima 4 | amino acid change |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
− 285 | 5’UTR | T | T | T | C | C | C | T | C | C | C | – |
−244 | 5’UTR | (CCG)6 | (CCG)6 | (CCG)6 | (CCG)3 | (CCG)5 | (CCG)6 | (CCG)6 | (CCG)3 | (CCG)3 | (CCG)3 | – |
− 210 | 5’UTR | – | – | – | C | – | G | C | C | C | C | – |
− 159 | 5’UTR | C | C | C | T | T | T | T | T | T | T | – |
417 | 1st intron | GCTAGC.....TAGTAGCT | GCTAGC.....TAGTAGCT | GCTAGC.....TAGTAGCT | GCTAGCTACTGTAGTAGCT | GCTAGC.....TAGTAGCT | GCTAGC.....TAGTAGCT | GCTAGC.....TAGTAGCT | GCTAGCTACTGTAGTAGCT | GCTAGCTACTGTAGTAGCT | GCTAGCTACTGTAGTAGCT | – |
479 | 1st intron | T | T | T | – | – | – | – | – | – | – | – |
582 | 2nd intron | C | C | C | T | T | T | T | T | T | T | – |
785 | 2nd intron | G | G | G | C | G | G | G | C | C | C | – |
1022 | 2nd intron | C | C | C | T | T | T | T | T | T | T | – |
1117 | 2nd intron | T | T | T | C | T | T | T | T | C | C | – |
1435 | 4th exon | T | T | C | T | T | T | T | C | T | T | I/T |
1515 | 4th intron | G | G | G | A | G | G | G | A | A | A | – |
1523 | 4th intron | A | A | A | G | A | A | A | A | G | G | – |
1543 | 4th intron | A | A | A | G | A | A | A | A | G | G | – |
1814 | 5th exon | G | G | G | C | G | G | G | C | C | C | G/R |
1907 | 5th exon | A | A | A | G | G | G | G | G | G | G | T/A |
1948 | 5th exon | C | C | C | T | C | C | C | T | T | T | – |
2000 | 3’UTR | TT | CT | TT | AT | CT | TT | TT | A | AT | AT | – |