Table 4 Percentage nucleotide identity (on the left) and percentage amino acid identity (on the right) between duplicated Hox coding regions in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M (following the format above)
HoxA4a (%) | HoxA9a (%) | HoxA2b (%) | HoxA11b (%) | HoxB1a (%) | HoxB4a (%) | HoxB1b (%) | HoxB5b (%) | HoxC4a (%) | HoxC6b (%) | HoxD4a (%) | HoxD10a (%) | |
|---|---|---|---|---|---|---|---|---|---|---|---|---|
IDMC-F1 i: IDMC-F1 ii | 94.6/98.5 | – | 93.8/97.6 | – | 87.7/P | – | – | 94.3/96.8 | 97.9/98.6 | – | 90.9/97.7 | 88.4/97.4 |
: IDMC-F2 i | 100.0/100.0 | 99.8/100.0 | 99.6/99.3 | 99.7/99.8 | 99.6/P | 99.6/P | 100.0/100.0 | 100.0/100.0 | 99.9/100.0 | 99.8/100.0 | 100.0/100.0 | 99.5/99.6 |
: IDMC-F2 ii | 94.5/98.5 | – | 93.7/97.6 | – | – | – | – | – | 97.7/98.6 | – | 91.0/97.7 | 88.5/97.4 |
: IDC-F2-C i | 99.7/99.0 | 100.0/100.0 | 99.6/98.9 | 99.7/99.8 | 99.5/P | 99.8/P | 100.0/100.0 | 99.8/100.0 | 100.0/100.0 | 99.8/100.0 | 99.8/99.4 | 99.9/100.0 |
: IDC-F2-C ii | 94.5/98.5 | 80.2/86.9 | 93.8/97.9 | – | – | – | – | 94.3/96.8 | 98.0/99.0 | – | 91.0/97.7 | 88.6/97.4 |
: IDC-F2-M i | 99.9/100.0 | 100.0/100.0 | 99.7/99.6 | 99.8/99.8 | 99.6/P | 99.8/P | 100.0/100.0 | 99.8/100.0 | 99.9/100.0 | 99.8/100.0 | 99.8/100.0 | 99.8/100.0 |
: IDC-F2-M ii | 94.2/98.5 | – | 93.8/97.9 | – | – | – | – | 94.3/96.4 | 97.9/99.0 | – | 90.9/97.2 | 88.3/97.0 |
: COC i | 99.8/99.0 | 99.8/100.0 | 99.7/99.6 | 99.7/99.5 | 99.5/P | 99.6/P | 99.5/100.0 | 99.9/100.0 | 99.9/100.0 | 99.1/98.9 | 99.7/99.4 | 99.2/98.5 |
: COC ii | 94.5/98.0 | 80.1/88.5 | 93.8/97.9 | – | 87.8/P | – | – | 94.1/96.4 | 98.0/99.0 | – | 90.9/97.7 | 88.3/97.4 |
: BSB | 92.3/98.5 | 77.2/85.4 | 95.1/97.3 | 74.2/94.4 | 86.3/P | 85.8/P | 86.2/91.1 | 89.9/97.6 | 93.4/91.6 | 83.3/97.3 | 87.9/95.5 | 81.5/97.0 |
IDMC-F1 ii: IDMC-F2 i | 94.6/98.5 | – | 93.9/97.6 | – | 87.8/P | – | – | 94.3/96.8 | 97.8/98.6 | – | 90.9/97.7 | 88.1/97.8 |
: IDMC-F2 ii | 99.9/100.0 | – | 99.7/99.3 | – | – | – | – | – | 99.5/99.0 | – | 99.8/100.0 | 99.6/99.2 |
: IDC-F2-C i | 94.5/97.5 | – | 93.9/97.3 | – | 87.6/P | – | – | 94.3/96.8 | 97.9/98.6 | – | 90.8/97.2 | 88.3/97.4 |
: IDC-F2-C ii | 99.9/100.0 | – | 99.7/99.6 | – | – | – | – | 99.8/100.0 | 99.9/99.5 | – | 99.8/100.0 | 99.6/99.2 |
: IDC-F2-M i | 94.5/98.5 | – | 94.0/97.9 | – | 87.8/P | – | – | 94.3/96.8 | 98.0/98.6 | – | 90.8/97.7 | 88.3/97.4 |
: IDC-F2-M ii | 99.6/100.0 | – | 99.7/99.6 | – | – | – | – | 99.8/99.6 | 99.7/99.5 | – | 99.7/99.4 | 99.2/98.9 |
: COC i | 94.6/98.5 | – | 93.9/97.9 | – | 87.8/P | – | – | 94.2/96.8 | 98.0/98.6 | – | 90.9/97.2 | 88.0/96.7 |
: COC ii | 99.7/99.5 | – | 99.8/99.6 | – | 99.2/99.1 | – | – | 99.8/99.6 | 99.9/99.5 | – | 99.6/100.0 | 99.4/99.2 |
: BSB | 92.3/98.0 | – | 95.0/96.9 | – | 85.0/95.9 | – | – | 90.5/96.8 | 93.3/92.1 | – | 86.5/94.4 | 81.4/97.0 |
IDMC-F2 i: IDMC-F2 ii | 94.5/98.5 | – | 93.7/97.6 | – | – | – | – | – | 97.8/98.6 | – | 91.0/97.7 | 88.2/97.8 |
: IDC-F2-C i | 99.7/99.0 | 99.8/100.0 | 99.7/98.9 | 99.7/99.7 | 99.8/P | 99.6/P | 100.0/100.0 | 99.8/100.0 | 99.9/100.0 | 99.7/100.0 | 99.8/99.4 | 99.6/99.6 |
: IDC-F2-C ii | 94.5/98.5 | 80.1/86.9 | 93.7/97.9 | – | – | – | – | 94.3/96.8 | 97.9/99.0 | – | 91.0/97.7 | 88.3/97.8 |
: IDC-F2-M i | 99.9/100.0 | 99.8/100.0 | 99.8/99.6 | 99.7/99.7 | 100.0/P | 99.6/P | 100.0/100.0 | 99.8/100.0 | 99.8/100.0 | 99.7/100.0 | 99.8/100.0 | 99.6/99.6 |
: IDC-F2-M ii | 94.2/98.5 | – | 93.7/97.9 | – | – | – | – | 94.3/96.4 | 97.8/99.0 | – | 90.9/97.2 | 87.9/97.4 |
: COC i | 99.8/99.0 | 100.0/100.0 | 99.7/99.6 | 99.7/99.5 | 99.8/P | 99.6/P | 99.5/100.0 | 99.9/100.0 | 99.8/100.0 | 99.0/98.9 | 99.7/99.4 | 99.1/98.9 |
: COC ii | 94.5/98.0 | 80.2/88.5 | 93.9/97.9 | – | 87.8/P | – | – | 94.1/96.4 | 97.9/99.0 | – | 90.9/97.7 | 88.0/97.8 |
: BSB | 92.3/98.5 | 77.3/85.4 | 95.0/97.3 | 74.0/94.2 | 86.4/P | 85.9/P | 86.2/91.1 | 89.9/97.6 | 93.5/91.6 | 83.3/97.3 | 87.9/95.5 | 81.3/97.4 |
IDMC-F2 ii: IDC-F2-C i | 94.4/97.5 | – | 93.7/97.3 | – | – | – | – | – | 97.7/98.6 | – | 90.9/97.2 | 88.4/97.4 |
: IDC-F2-C ii | 100.0/100.0 | – | 99.7/99.6 | – | – | – | – | – | 99.6/99.5 | – | 100.0/100.0 | 99.8/100.0 |
: IDC-F2-M i | 94.6/98.5 | – | 93.9/97.9 | – | – | – | – | – | 97.8/98.6 | – | 90.9/97.7 | 88.3/97.4 |
: IDC-F2-M ii | 99.7/100.0 | – | 99.7/99.6 | – | – | – | – | – | 99.8/99.5 | – | 99.8/99.4 | 99.4/99.6 |
: COC i | 94.5/98.5 | – | 93.7/97.9 | – | – | – | – | – | 97.8/98.6 | – | 91.0/97.2 | 88.0/96.7 |
: COC ii | 99.6/99.5 | – | 99.7/99.6 | – | – | – | – | – | 99.6/99.5 | – | 99.7/100.0 | 99.6/100.0 |
: BSB | 92.2/98.0 | – | 94.9/96.9 | – | – | – | – | – | 93.2/92.1 | – | 86.6/94.4 | 81.4/97.0 |
IDC-F2-C i: IDC-F2-C ii | 94.4/97.5 | 80.2/86.9 | 93.7/97.6 | – | – | – | – | 94.3/96.8 | 98.0/99.0 | – | 90.9/97.2 | 88.5/97.4 |
: IDC-F2-M i | 99.6/99.0 | 100.0/100.0 | 99.8/99.3 | 99.9/100.0 | 99.8/P | 99.8/P | 100.0/100.0 | 99.8/100.0 | 99.9/100.0 | 99.7/100.0 | 99.7/99.4 | 99.9/100.0 |
: IDC-F2-M ii | 94.1/97.5 | – | 93.7/97.6 | – | – | – | – | 94.3/96.4 | 97.9/99.0 | – | 90.8/96.6 | 88.2/97.0 |
: COC i | 99.5/98.0 | 99.8/100.0 | 99.7/99.3 | 99.7/99.7 | 99.7/P | 99.6/P | 99.5/100.0 | 99.7/100.0 | 99.9/100.0 | 99.1/98.9 | 99.6/98.8 | 99.2/98.5 |
: COC ii | 94.4/97.0 | 80.1/88.5 | 93.9/97.6 | – | 87.7/P | – | – | 94.1/96.4 | 98.0/99.0 | – | 90.8/97.2 | 88.3/97.4 |
: BSB | 92.0/97.5 | 77.2/85.4 | 95.0/96.9 | 74.2/94.5 | 86.3/P | 85.8/P | 86.2/91.1 | 89.7/97.6 | 93.4/91.6 | 83.2/97.3 | 87.8/94.9 | 81.4/97.0 |
IDC-F2-C ii: IDC-F2-M i | 94.6/98.5 | 80.2/86.9 | 93.9/98.3 | – | – | – | – | 94.3/96.8 | 98.1/99.0 | – | 90.9/97.7 | 88.5/97.4 |
: IDC-F2-M ii | 99.7/100.0 | – | 100.0/100.0 | – | – | – | – | 99.8/99.6 | 99.8/100.0 | – | 99.8/99.4 | 99.4/99.6 |
: COC i | 94.5/98.5 | 80.1/86.9 | 93.9/98.3 | – | – | – | – | 94.2/96.8 | 98.1/99.0 | – | 91.0/97.2 | 88.2/96.7 |
: COC ii | 99.6/99.5 | 99.2/98.4 | 99.7/100.0 | – | – | – | – | 99.8/99.6 | 100.0/100.0 | – | 99.7/100.0 | 99.6/100.0 |
: BSB | 92.2/98.0 | 80.3/88.5 | 95.0/97.3 | – | – | – | – | 90.5/96.8 | 93.3/92.5 | – | 86.6/94.4 | 81.4/97.0 |
IDC-F2-M i: IDC-F2-M ii | 94.3/98.5 | – | 93.9/98.3 | – | – | – | – | 94.3/96.4 | 98.0/99.0 | – | 90.8/97.2 | 88.1/97.0 |
: COC i | 99.7/99.0 | 99.8/100.0 | 99.8/100.0 | 99.8/99.7 | 99.8/P | 99.6/P | 99.5/100.0 | 99.7/100.0 | 100.0/100.0 | 99.0/98.9 | 99.6/99.4 | 99.2/98.5 |
: COC ii | 94.4/98.0 | 80.1/88.5 | 94.0/98.3 | – | 87.8/P | – | – | 94.1/96.4 | 98.1/99.0 | – | 90.8/97.7 | 88.2/97.4 |
: BSB | 92.2/98.5 | 77.2/85.4 | 95.1/97.6 | 74.2/94.5 | 86.4/P | 85.8/P | 86.2/91.1 | 89.7/97.6 | 93.5/91.6 | 83.2/97.3 | 87.8/95.5 | 81.4/97.0 |
IDC-F2-M ii: COC i | 94.2/98.5 | – | 93.9/98.3 | – | – | – | – | 94.2/96.4 | 98.0/99.0 | – | 90.9/96.6 | 87.8/96.3 |
: COC ii | 99.4/99.5 | – | 99.7/100.0 | – | – | – | – | 99.6/99.2 | 99.8/100.0 | – | 99.6/99.4 | 99.4/99.6 |
: BSB | 91.9/98.0 | – | 95.0/97.3 | – | – | – | – | 90.5/96.4 | 93.3/92.5 | – | 86.5/93.8 | 81.3/96.7 |
COC i: COC ii | 94.5/98.0 | 80.2/88.5 | 93.9/98.3 | – | 87.8/P | – | – | 94.0/96.4 | 98.1/99.0 | – | 90.9/97.2 | 87.9/96.7 |
: BSB | 92.3/98.5 | 77.3/85.4 | 95.1/97.6 | 74.2/94.5 | 86.4/P | 86.0/P | 86.0/91.1 | 89.8/97.6 | 93.5/91.6 | 82.9/96.3 | 87.9/94.9 | 81.0/96.3 |
COC ii: BSB | 92.2/97.5 | 80.3/89.0 | 95.0/97.3 | – | 85.2/95.9 | – | – | 90.3/96.4 | 93.3/92.5 | – | 86.5/94.4 | 81.4/97.0 |