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Table 4 Percentage nucleotide identity (on the left) and percentage amino acid identity (on the right) between duplicated Hox coding regions in COC, BSB, IDC-F1, IDMC-F1, IDMC-F2, IDC-F2-C, and IDC-F2-M (following the format above)

From: Rapid genomic DNA variation in newly hybridized carp lineages derived from Cyprinus carpio (♀) × Megalobrama amblycephala (♂)

  HoxA4a (%) HoxA9a (%) HoxA2b (%) HoxA11b (%) HoxB1a (%) HoxB4a (%) HoxB1b (%) HoxB5b (%) HoxC4a (%) HoxC6b (%) HoxD4a (%) HoxD10a (%)
IDMC-F1 i: IDMC-F1 ii 94.6/98.5 93.8/97.6 87.7/P 94.3/96.8 97.9/98.6 90.9/97.7 88.4/97.4
: IDMC-F2 i 100.0/100.0 99.8/100.0 99.6/99.3 99.7/99.8 99.6/P 99.6/P 100.0/100.0 100.0/100.0 99.9/100.0 99.8/100.0 100.0/100.0 99.5/99.6
: IDMC-F2 ii 94.5/98.5 93.7/97.6 97.7/98.6 91.0/97.7 88.5/97.4
: IDC-F2-C i 99.7/99.0 100.0/100.0 99.6/98.9 99.7/99.8 99.5/P 99.8/P 100.0/100.0 99.8/100.0 100.0/100.0 99.8/100.0 99.8/99.4 99.9/100.0
: IDC-F2-C ii 94.5/98.5 80.2/86.9 93.8/97.9 94.3/96.8 98.0/99.0 91.0/97.7 88.6/97.4
: IDC-F2-M i 99.9/100.0 100.0/100.0 99.7/99.6 99.8/99.8 99.6/P 99.8/P 100.0/100.0 99.8/100.0 99.9/100.0 99.8/100.0 99.8/100.0 99.8/100.0
: IDC-F2-M ii 94.2/98.5 93.8/97.9 94.3/96.4 97.9/99.0 90.9/97.2 88.3/97.0
: COC i 99.8/99.0 99.8/100.0 99.7/99.6 99.7/99.5 99.5/P 99.6/P 99.5/100.0 99.9/100.0 99.9/100.0 99.1/98.9 99.7/99.4 99.2/98.5
: COC ii 94.5/98.0 80.1/88.5 93.8/97.9 87.8/P 94.1/96.4 98.0/99.0 90.9/97.7 88.3/97.4
: BSB 92.3/98.5 77.2/85.4 95.1/97.3 74.2/94.4 86.3/P 85.8/P 86.2/91.1 89.9/97.6 93.4/91.6 83.3/97.3 87.9/95.5 81.5/97.0
IDMC-F1 ii: IDMC-F2 i 94.6/98.5 93.9/97.6 87.8/P 94.3/96.8 97.8/98.6 90.9/97.7 88.1/97.8
: IDMC-F2 ii 99.9/100.0 99.7/99.3 99.5/99.0 99.8/100.0 99.6/99.2
: IDC-F2-C i 94.5/97.5 93.9/97.3 87.6/P 94.3/96.8 97.9/98.6 90.8/97.2 88.3/97.4
: IDC-F2-C ii 99.9/100.0 99.7/99.6 99.8/100.0 99.9/99.5 99.8/100.0 99.6/99.2
: IDC-F2-M i 94.5/98.5 94.0/97.9 87.8/P 94.3/96.8 98.0/98.6 90.8/97.7 88.3/97.4
: IDC-F2-M ii 99.6/100.0 99.7/99.6 99.8/99.6 99.7/99.5 99.7/99.4 99.2/98.9
: COC i 94.6/98.5 93.9/97.9 87.8/P 94.2/96.8 98.0/98.6 90.9/97.2 88.0/96.7
: COC ii 99.7/99.5 99.8/99.6 99.2/99.1 99.8/99.6 99.9/99.5 99.6/100.0 99.4/99.2
: BSB 92.3/98.0 95.0/96.9 85.0/95.9 90.5/96.8 93.3/92.1 86.5/94.4 81.4/97.0
IDMC-F2 i: IDMC-F2 ii 94.5/98.5 93.7/97.6 97.8/98.6 91.0/97.7 88.2/97.8
: IDC-F2-C i 99.7/99.0 99.8/100.0 99.7/98.9 99.7/99.7 99.8/P 99.6/P 100.0/100.0 99.8/100.0 99.9/100.0 99.7/100.0 99.8/99.4 99.6/99.6
: IDC-F2-C ii 94.5/98.5 80.1/86.9 93.7/97.9 94.3/96.8 97.9/99.0 91.0/97.7 88.3/97.8
: IDC-F2-M i 99.9/100.0 99.8/100.0 99.8/99.6 99.7/99.7 100.0/P 99.6/P 100.0/100.0 99.8/100.0 99.8/100.0 99.7/100.0 99.8/100.0 99.6/99.6
: IDC-F2-M ii 94.2/98.5 93.7/97.9 94.3/96.4 97.8/99.0 90.9/97.2 87.9/97.4
: COC i 99.8/99.0 100.0/100.0 99.7/99.6 99.7/99.5 99.8/P 99.6/P 99.5/100.0 99.9/100.0 99.8/100.0 99.0/98.9 99.7/99.4 99.1/98.9
: COC ii 94.5/98.0 80.2/88.5 93.9/97.9 87.8/P 94.1/96.4 97.9/99.0 90.9/97.7 88.0/97.8
: BSB 92.3/98.5 77.3/85.4 95.0/97.3 74.0/94.2 86.4/P 85.9/P 86.2/91.1 89.9/97.6 93.5/91.6 83.3/97.3 87.9/95.5 81.3/97.4
IDMC-F2 ii: IDC-F2-C i 94.4/97.5 93.7/97.3 97.7/98.6 90.9/97.2 88.4/97.4
: IDC-F2-C ii 100.0/100.0 99.7/99.6 99.6/99.5 100.0/100.0 99.8/100.0
: IDC-F2-M i 94.6/98.5 93.9/97.9 97.8/98.6 90.9/97.7 88.3/97.4
: IDC-F2-M ii 99.7/100.0 99.7/99.6 99.8/99.5 99.8/99.4 99.4/99.6
: COC i 94.5/98.5 93.7/97.9 97.8/98.6 91.0/97.2 88.0/96.7
: COC ii 99.6/99.5 99.7/99.6 99.6/99.5 99.7/100.0 99.6/100.0
: BSB 92.2/98.0 94.9/96.9 93.2/92.1 86.6/94.4 81.4/97.0
IDC-F2-C i: IDC-F2-C ii 94.4/97.5 80.2/86.9 93.7/97.6 94.3/96.8 98.0/99.0 90.9/97.2 88.5/97.4
: IDC-F2-M i 99.6/99.0 100.0/100.0 99.8/99.3 99.9/100.0 99.8/P 99.8/P 100.0/100.0 99.8/100.0 99.9/100.0 99.7/100.0 99.7/99.4 99.9/100.0
: IDC-F2-M ii 94.1/97.5 93.7/97.6 94.3/96.4 97.9/99.0 90.8/96.6 88.2/97.0
: COC i 99.5/98.0 99.8/100.0 99.7/99.3 99.7/99.7 99.7/P 99.6/P 99.5/100.0 99.7/100.0 99.9/100.0 99.1/98.9 99.6/98.8 99.2/98.5
: COC ii 94.4/97.0 80.1/88.5 93.9/97.6 87.7/P 94.1/96.4 98.0/99.0 90.8/97.2 88.3/97.4
: BSB 92.0/97.5 77.2/85.4 95.0/96.9 74.2/94.5 86.3/P 85.8/P 86.2/91.1 89.7/97.6 93.4/91.6 83.2/97.3 87.8/94.9 81.4/97.0
IDC-F2-C ii: IDC-F2-M i 94.6/98.5 80.2/86.9 93.9/98.3 94.3/96.8 98.1/99.0 90.9/97.7 88.5/97.4
: IDC-F2-M ii 99.7/100.0 100.0/100.0 99.8/99.6 99.8/100.0 99.8/99.4 99.4/99.6
: COC i 94.5/98.5 80.1/86.9 93.9/98.3 94.2/96.8 98.1/99.0 91.0/97.2 88.2/96.7
: COC ii 99.6/99.5 99.2/98.4 99.7/100.0 99.8/99.6 100.0/100.0 99.7/100.0 99.6/100.0
: BSB 92.2/98.0 80.3/88.5 95.0/97.3 90.5/96.8 93.3/92.5 86.6/94.4 81.4/97.0
IDC-F2-M i: IDC-F2-M ii 94.3/98.5 93.9/98.3 94.3/96.4 98.0/99.0 90.8/97.2 88.1/97.0
: COC i 99.7/99.0 99.8/100.0 99.8/100.0 99.8/99.7 99.8/P 99.6/P 99.5/100.0 99.7/100.0 100.0/100.0 99.0/98.9 99.6/99.4 99.2/98.5
: COC ii 94.4/98.0 80.1/88.5 94.0/98.3 87.8/P 94.1/96.4 98.1/99.0 90.8/97.7 88.2/97.4
: BSB 92.2/98.5 77.2/85.4 95.1/97.6 74.2/94.5 86.4/P 85.8/P 86.2/91.1 89.7/97.6 93.5/91.6 83.2/97.3 87.8/95.5 81.4/97.0
IDC-F2-M ii: COC i 94.2/98.5 93.9/98.3 94.2/96.4 98.0/99.0 90.9/96.6 87.8/96.3
: COC ii 99.4/99.5 99.7/100.0 99.6/99.2 99.8/100.0 99.6/99.4 99.4/99.6
: BSB 91.9/98.0 95.0/97.3 90.5/96.4 93.3/92.5 86.5/93.8 81.3/96.7
COC i: COC ii 94.5/98.0 80.2/88.5 93.9/98.3 87.8/P 94.0/96.4 98.1/99.0 90.9/97.2 87.9/96.7
: BSB 92.3/98.5 77.3/85.4 95.1/97.6 74.2/94.5 86.4/P 86.0/P 86.0/91.1 89.8/97.6 93.5/91.6 82.9/96.3 87.9/94.9 81.0/96.3
COC ii: BSB 92.2/97.5 80.3/89.0 95.0/97.3 85.2/95.9 90.3/96.4 93.3/92.5 86.5/94.4 81.4/97.0
  1. Notes: Values before slashes (/) denote nucleotide identity, and values after slashes denote amino acid identity; P represents one or two amino acid sequences as pseudogene sequences for which the identity cannot be compared