Locus name | Forward primer sequence(5′-3′) | Reverse primer sequence(5′-3′) | Repeat unit | Annealing temperature | Size range (bp) | N A | N E | H o | H e | A r | r | F IS | P HWE |
---|---|---|---|---|---|---|---|---|---|---|---|---|---|
c119_g1_i1 | F:GGGAGGAGTTTCGTATTCGTT | R:TTTTGCCTCCTCTTTTCAGG | (TGA)5 | 54 °C | 251–263 | 4 | 1.096 | 0.072 | 0.087 | 2.462 | 0.021 | 0.160 | 0.278 |
c251_g1_i1 | F:TGAATGACGTCACGGTTGTT | R:CGTGGAGATGTGGGAGTGTA | (AC)8 | 54 °C | 236–248 | 7 | 1.654 | 0.335 | 0.395 | 4.479 | 0.042 | 0.134 | 0.008** |
c317_g1_i1 | F:GGGATGGCCTGTAAAGTTGA | R:CACCTCCAGTCTCAAAAGCC | (CAT)5 | 54 °C | 269–275 | 5 | 1.128 | 0.100 | 0.114 | 2.946 | 0.014 | 0.072 | 0.144 |
c341_g1_i1 | F:GCTGTTGAGCACTTTCATTCA | R:GGGCTCATGTTAAATCCAAGA | (TA)7 | 54 °C | 258–272 | 9 | 1.938 | 0.295 | 0.484 | 4.407 | 0.068 | 0.211 | 0.000** |
c864_g1_i1 | F:GATGCGATAGATGACGCCTT | R:ATGCTTAGGTGGTGGAGTGG | (TGA)6 | 54 °C | 263–272 | 4 | 1.204 | 0.185 | 0.169 | 2.563 | 0.000 | −0.178* | 0.973 |
c1089_g1_i1 | F:GTGATCCAGGTCGAACACAA | R:TTCTACCCGGTGCTTTTGAC | (GGA)5 | 54 °C | 196–201 | 5 | 2.005 | 0.430 | 0.501 | 2.707 | 0.044 | 0.055* | 0.000** |
c870_g2_i1 | F:TGGTTCTATCCGCAGATTCC | R:CCTTCCTGTTGGTGGTGTCT | (TCA)6 | 54 °C | 189–192 | 2 | 1.137 | 0.072 | 0.120 | 1.994 | 0.003 | 0.065* | 0.000** |
c679_g1_i1 | F:TTTGCTGGCAAGGAACATTA | R:AGATCACCCCTCTTCCTTCC | (AGG)5 | 54 °C | 92–114 | 4 | 2.887 | 0.596 | 0.654 | 3.838 | 0.022 | 0.035* | 0.194 |
c792_g1_i1 | F:TTGGCTTCAGCAAATCCTTT | R:TCCTTTCGCTTTTGATACCAG | (AT)6 | 54 °C | 198–208 | 6 | 1.643 | 0.235 | 0.391 | 2.991 | 0.094 | 0.325* | 0.000** |
c102_g1_i1 | F:TGGTGATGGGGATTTCCTTA | R:TTCTTTTATTGTCTGATTATGCCA | (AT)6 | 54 °C | 256–264 | 5 | 1.930 | 0.282 | 0.482 | 4.813 | 0.094 | 0.246* | 0.000** |
c1157_g2_i1 | F:ATGTCGGAACGGACAGAAAA | R:TGAAGCAGAGGAAACGTTGA | (GA)7 | 54 °C | 105–109 | 3 | 2.305 | 0.254 | 0.566 | 3.000 | 0.093 | 0.333* | 0.000** |
c1198_g1_i1 | F:TCTGGAAAATTTTTGGGCAC | R:GAAATTAAGGTTTAGCACATTCTCC | (TA)7 | 54 °C | 165–201 | 6 | 3.136 | 0.430 | 0.681 | 4.326 | 0.131 | 0.320* | 0.000** |
c1730_g1_i1 | F:TGAAATTCCAGGAAAGGCTG | R:CGTGTCCTTCCACGAAAGAG | (GGA)5 | 54 °C | 191–209 | 13 | 3.291 | 0.511 | 0.696 | 6.042 | 0.043 | 0.094 | 0.055 |
c1747_g1_i1 | F:CAGGAGACCATGTAGAATTACGC | R:TTTGATGACAACGTGGCACT | (CA)7 | 54 °C | 186–222 | 13 | 3.628 | 0.542 | 0.724 | 7.478 | 0.046 | 0.081* | 0.000** |
c2017_g1_i1 | F:GTGATTTGACGTGACGAACG | R:AGACTGCAGGAGAGGCTCAG | (GAT)6 | 54 °C | 253–271 | 5 | 1.139 | 0.129 | 0.122 | 3.021 | 0.000 | −0.097* | 1.000 |
c2591_g1_i1 | F:GCATCAGAAACTTGGAGCCT | R:ACAGTAGCTAGGGGGCTTGG | (TG)10 | 54 °C | 148–154 | 2 | 1.006 | 0.006 | 0.006 | 1.213 | 0.001 | −0.013* | 1.000 |