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Table 2 BTA1 telomeric SNPs

From: Bos taurus–indicus hybridization correlates with intralocus sexual-conflict effects of PRDM9 on male and female fertility in Holstein cattle

SNP markera

BTA1 position

A1 (minor)

A2

MAFb

βc

ARS-BFGL-NGS-73542

157,229,645

A

G

0.4020

−0.01

ARS-BFGL-NGS-19721

157,253,652

G

A

0.4090

0.04

ARS-BFGL-NGS-101788

157,307,208

A

G

0.3740

−0.02

BTA-105868-no-rs

157,328,448

A

G

0.2400

0.10

BTB-01585499

157,367,221

G

A

0.2910

−0.08

ARS-BFGL-NGS-113905

157,405,441

A

G

0.0373

−0.50

ARS-BFGL-NGS-90894

157,431,081

A

G

0.1570

0.04

ARS-BFGL-NGS-83544

157,458,860

A

G

0.0913

−0.30

Hapmap26498-BTA-33060

157,503,718

A

G

0.3490

−0.05

ARS-BFGL-NGS-76717

157,542,408

G

A

0.2350

−0.16

  1. a Boldfaced names indicate SNP alleles with exceptionally low frequency and β values
  2. b Frequency of the minor allele was calculated based on 1750 BeadChips
  3. c Marker effects on male fertility were estimated using PLINK Fisher’s exact test