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Table 4 Associations of haplotype block with milk fatty acid traits (LSM ± SE)

From: A post-GWAS confirming effects of PRKG1 gene on milk fatty acids in a Chinese Holstein dairy population

Haplotype combination (No.)

C6:0 (%)

C8:0 (%)

C10:0 (%)

C11:0 (%)

C12:0 (%)

C13:0 (%)

C14:0 (%)

C14:1 (%)

C15:0 (%)

C16:0 (%)

C16:1 (%)

C17:0 (%)

 H1H1(425–460)

0.4728 ± 0.0127

0.9386 ± 0.0113A

2.8469 ± 0.0338A

0.05885 ± 0.0025

3.0339 ± 0.0429

0.1004 ± 0.0030

10.2692 ± 0.0730

0.6462 ± 0.0188

0.9876 ± 0.0128

34.6121 ± 0.1859

1.2967 ± 0.0259A

0.5629 ± 0.0033

 H1H2(222–241)

0.4565 ± 0.0141

0.9001 ± 0.0123B

2.7865 ± 0.0366AB

0.05977 ± 0.0028

3.0170 ± 0.0474

0.0988 ± 0.0035

10.2383 ± 0.0808

0.6505 ± 0.0216

1.0003 ± 0.0147

34.9404 ± 0.2085

1.3750 ± 0.0291B

0.5701 ± 0.0037

 H1H3(131–141)

0.4566 ± 0.0164

0.8898 ± 0.0141B

2.7124 ± 0.0412B

0.05754 ± 0.0033

2.9655 ± 0.0539

0.0974 ± 0.0042

10.2915 ± 0.0901

0.6679 ± 0.0254

0.9995 ± 0.0173

35.0372 ± 0.2413

1.3139 ± 0.0334AB

0.5663 ± 0.0043

 P

0.2858

<.0001**

0.0001**

0.8051

0.3027

0.7396

0.8047

0.6499

0.5641

0.0562

0.0064**

0.0921

Haplotype combination (No.)

C17:1 (%)

C18:0 (%)

C18:1cis-9 (%)

C18 index (%)

C20:0 (%)

C14 index (%)

C16 index (%)

C17 index (%)

SFA (%)

UFA (%)

SFA/UFA (%)

Total index (%)

 H1H1(381–461)

0.1861 ± 0.0026A

14.0115 ± 0.0914

19.2062 ± 0.1219

57.4640 ± 0.2836

0.1665 ± 0.0018A

6.0911 ± 0.1446

3.5441 ± 0.0670A

24.6053 ± 0.2291

67.9358 ± 0.1682

30.4681 ± 0.1529

2.2795 ± 0.0223

27.6825 ± 0.1325

 H1H2(204–241)

0.1944 ± 0.0029B

14.1742 ± 0.1051

19.1667 ± 0.1413

57.0101 ± 0.3224

0.1739 ± 0.0020B

6.2607 ± 0.1663

3.7273 ± 0.0743B

24.9757 ± 0.2520

68.1710 ± 0.1925

30.3413 ± 0.1760

2.2958 ± 0.0257

27.5723 ± 0.1512

 H1H3(111–141)

0.1894 ± 0.0034AB

14.1604 ± 0.1256

19.0181 ± 0.1684

56.9894 ± 0.3797

0.1748 ± 0.0025B

6.2861 ± 0.1872

3.5797 ± 0.0862AB

24.9042 ± 0.2895

68.1271 ± 0.2277

30.3420 ± 0.2088

2.3025 ± 0.0302

27.3473 ± 0.1793

 P

0.0037**

0.1869

0.4951

0.1820

<.0001**

0.3207

0.0123*

0.1688

0.3480

0.6593

0.6378

0.1307

  1. Note: LSM least square mean, SE standard error. P indicates the significances of the association analysis between the haplotype block and milk fatty acid traits. P is the raw value. *: P < 0.05. **: P < 0.01. Different letter (small letters: P < 0.05; capital letters: P < 0.01) superscripts indicate significant differences among the haplotype combinations. The number in the brackets represents the number of cows for the corresponding haplotype combination