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Table 1 2DL DEG between R and S NIL that were further characterized by RT-qPCR

From: Identification and mapping of expressed genes associated with the 2DL QTL for fusarium head blight resistance in the wheat line Wuhan 1

2DL DEG Name (IWGSC release 2.25)

Annotation

IWGSC RefSeq v1.0e

Expression pattern

RT-qPCR characterization

Name

Start

End

In 3 pairs of NIL

In Wuhan 1, Nyubai

In DH population

Traes_2DL_03CAA3B80a

copper-transporting ATPase PAA2, chloroplastic

TraesCS2D01G495500LC

493,192,302

493,195,914

2

yes

yes

yes

Traes_2DL_0A96AAC5Ba

Sodium transporter protein

TraesCS2D02G428300

540,161,984

540,166,078

24

yes

  

Traes_2DL_0AB0ABFD5

Malate synthase

TraesCS2D02G344200

440,325,740

440,328,360

27

yes

  

Traes_2DL_179570792a

WD-40 repeat family protein

TraesCS2D02G440500

550,630,373

550,636,721

1

yes

yes

yes

Traes_2DL_3BBD24259a

Smr domain-containing protein

TraesCS2D02G415100

529,007,465

529,012,316

12

yes

  

Traes_2DL_3F691BC13

Receptor kinase

TraesCS2D02G599300

650,752,287

650,757,581

9

yes

  

Traes_2DL_44552FCF2

DnaJ / Sec63 Brl domains-containing protein

TraesCS2D02G275600

345,248,090

345,248,281

23

yes

  

Traes_2DL_7B0056729

Serine incorporator

TraesCS2D02G347800

445,890,982

445,897,188

20

yes

  

Traes_2DL_848E9C4A6a

Heat shock transcription factor

TraesCS2D02G399000

512,041,712

512,043,335

36

yes

  

Traes_2DL_89A313AC3

Glycin-rich RNA-binding protein

TraesCS2D02G302400

385,568,830

385,570,145

28

yes

yes

 

Traes_2DL_BB6F31152

Receptor protein kinase

TraesCS2D02G248200

291,952,536

291,956,775

9

yes

  

Traes_2DL_E301DD433a

BTB/POZ and TAZ domain-containing protein 2

TraesCS2D02G339900

434,138,340

434,140,330

31

yes

  

Traes_2DL_F784FBAA3a

2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase

TraesCS2D02G392900

500,791,603

500,793,692

24

yes

  

Traes_2DL_07F08C844a,b

cysteine-rich/transmembrane domain A-like protein

TraesCS2D02G417400

531,711,723

531,712,483

23

 

yes

yes

Traes_2DL_37D967CFCa,b

CC-NBS-LRR protein

TraesCS2D02G380500

484,858,484

484,862,886

23

 

yes

yes

Traes_2DL_382370E3B

Pectinesterase

TraesCS2D02G322500

413,777,752

413,779,866

18

 

yes

yes

Traes_2DL_5642F7EAC

Receptor-like protein kinase

TraesCS2D02G263100

320,280,150

320,283,723

10

 

yes

 

Traes_2DL_647B61E84

1,4-alpha-glucan-branching enzyme

TraesCS2D02G290800

372,924,177

372,935,106

7

 

yes

 

Traes_2DL_892F83E0B

Sec14p-like phosphatidylinositol transfer protein

TraesCS2D02G335700

429,053,162

429,057,812

18

 

yes

 

Traes_2DL_8A90A6C4Fa

Ankyrin repeat protein

TraesCS2D02G395500

506,771,094

506,784,989

39

 

yes

 

Traes_2DL_8F75414FD

Protein kinase

TraesCS2D02G301200

383,845,349

383,849,177

9

 

yes

 

Traes_2DL_A208876FE

Elongation factor 1-alpha

TraesCS2D02G320200

411,416,487

411,417,559

5

 

yes

yes

Traes_2DL_B7ABC1CB9a,b

Hypoxia-responsive protein

TraesCS2D02G438000

547,762,760

547,764,965

23

 

yes

yes

Traes_2DL_BA1B746DF

MLP protein

TraesCS2D02G328200

421,480,422

421,481,366

9

 

yes

 

Traes_2DL_EDAEA1357a,b

Acidic endochitinase

TraesCS2D02G450600

560,399,016

560,400,258

31

 

yesg

 

Traes_2DL_FA7A15F63

Glycerophosphodiester phosphodiesterase

TraesCS2D02G332500

425,740,309

425,746,371

10

 

yes

 

UN25696c,d

Uncharacterized protein

(No gene model)f

446,264,922

446,266,534

 

yes

yes

yes

TaWRKYc Traes_2DL_B8483F711

WRKY transcription factor

TraesCS2D02G489700

588,676,152

588,677,693

  

yes

yes

TaACTc,d

Agmatine coumaroyltransferase-2

TraesCS2D02G490400

589,282,163

589,283,855

  

yes

yes

NPR1-likec Traes_2DL_14C8A084C

Receptor-like protein kinase

TraesCS2D02G572000

638,143,208

638,148,768

  

yes

yes

  1. aDEG physically located in 5 LOD interval for FHB resistance 2DL QTL, based on IWGSC RefSeq v1.0 [38, 47]
  2. bDEG with log2 FC > 1.5/<−1.5 for Wuhan 1/Nyubai at 2dai with F. graminearum
  3. cGenes proposed to contribute to the 2DL QTL for FHB resistance in literature [31, 33, 48]
  4. dNot annotated in Wheat Genome IWGSC release 2.25
  5. eBest BLAST hit in IWGSC RefSeq v1.0 [38, 47]
  6. f Not annotated in Wheat Genome IWGSC RefSeq v1.0 [38, 47]
  7. gNo expression was detected by RT-qPCR
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BMC Genomic Data

ISSN: 2730-6844

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