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Table 2 Summary of the external genes for the selected pathways

From: Identifying and exploiting gene-pathway interactions from RNA-seq data for binary phenotype

Database

Pathway

Size

Top genesa

GO

RNA processing

285

TUBB, H3F3B, SDCBP, NT5C2, FKBP5

GO

RNA splicing

127

TUBB, IL1R2, H3F3B, IFNGR1, PCSK7

GO

cytosolic ribosome

80

TUBB, CAMP, SAMM50, PSMD14, CHD8

GO

Cytoplasmic translation

25

TUBB, SDCBP, H3F3B, CMAHP, SLC44A2

KEGG

Platelet activation

70

STX7, PCNP, SDCBP, LEF1, TMEM140

KEGG

Fc gamma R-mediated phagocytosis

49

STX7, PCNP, CGRRF1, SHOC2, EFTUD2

  1. aTop five external genes for the significant pathway