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Table 7 Compared the SSR loci associated with GT, GC and AC in this study and QTLs for GT, GC and AC reported in the previous studies

From: Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping

Traits NO. SSR marker Chr. Start position (bp)a End position (bp)a QTL reported in the previous studies
Start position (bp)b End position (bp)b References
GT 1 RM232 3 8,409,404 8,410,886    
2 RM267 5 21,881,317 21,881,455 26,848,154 28,906,633 Temnykh et al. (2001) [62]
3 RM264 8 27,926,632 27,926,652 6,779,215 20,733,138 Septiningsih et al. (2003) [13]
4 RM3600 9 17,107,752 17,107,843    
GC 1 RM6712 3 35,020,004 35,020,027    
2 RM5753 6 30,452,023 30,452,067 2,686,204 4,897,779 Lanceras et al. (2000) [19]
AC 1 RM6712 3 35,020,004 35,020,027    
2 RM5753 6 30,452,023 30,452,067 30,822,884 3,459,750 McCouch et al. (2002) [63]
3 RM258 10 17,570,591 17,570,612    
4 RM6327 11 364,257 364,310    
  1. a,bThe SSR Marker and the QTL physical position (bp) was inferred from the Gremene (http://www.gramene.org/markers) and NCBI (https://www.ncbi.nlm.nih.gov/Blast.cgi) respectively