Skip to main content

Table 5 Top three favorable marker alleles on each locus detected GT, GC and AC across five environments and typical varieties carrying the allele

From: Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping

Traits

No.

Locus-allele

Chr.

MAF

Environment

PEV

Typical carrier variety

GT (grade)

1

RM232-155

3

0.071

E4

0.63

Feilaifeng

2

RM232-145

3

0.192

E4

0.67

Wanyedao

3

RM232-150

3

0.279

E4

0.03

Laowusi

4

RM267-95

5

0.086

E3

1.11

Xiangnuodao

5

RM267-125

5

0.106

E3

0.61

Feilaifeng

6

RM267-120

5

0.104

E3

0.39

Kuobanzhong

7

RM3600-90

9

0.186

E2

2.00

Longdun105

8

RM3600-85

9

0.368

E2

1.02

Ligengqing

9

RM3600-80

9

0.149

E2

0.29

Songjing12

10

RM264-195

8

0.128

E1

0.97

Shiluqing

11

RM264-160

8

0.132

E1

0.85

Kunnong8

12

RM264-130

8

0.091

E1

0.74

Yebaidao

GC (mm)

1

RM6712-95

3

0.190

E2

13.12

Dongnongjingnuo418

2

RM6712-115

3

0.223

E2

11.12

Baikenuo

3

RM5753-195

6

0.108

E4

24.02

Shenlenuo

4

RM5753-115

6

0.071

E4

28.57

Hongnong5

5

RM5753-130

6

0.069

E4

3.06

Haonuopie

AC (%)

1

RM6712-115

3

0.223

E1

-4.32

Molingjing

E2

-1.97

Xudao3

E3

-0.45

Wujing15

E5

-2.04

Baoxintaihuqing

2

RM6712-95

3

0.190

E1

-0.68

Dongnongjingnuo418

E2

-3.11

Munian4

E3

-1.67

Hangzhounuo

E5

-1.24

Munian4

3

RM5753-195

6

0.108

E2

-3.21

Guozinuo

4

RM5753-115

6

0.071

E2

-2.21

Suyunuo

5

RM5753-205

6

0.970

E2

-1.13

Suzhouqing

6

RM258-125

10

0.392

E1

-1.74

Yue109

7

RM258-140

10

0.247

E1

-0.76

Wandao68

8

RM258-135

10

0.307

E1

-0.70

Shenlenuo

9

RM6327-230

11

0.104

E2

-3.78

Jinggunuo

E3

-0.85

Hangzhounuo

10

RM6327-175

11

0.149

E2

-2.53

Baimangnuo

E3

-1.31

Baimangnuo

  1. Note: Fo r GT and GC trait, alleles with positive phenotypic effect value (PEV) are defined favorable alleles, whereas alleles with negative phenotypic effect value are considered as favorable alleles for AC trait