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Table 3 Comparison of D′ values for pair-wise SSR loci in each subpopulation

From: Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping

Cluster No. of significant LDa Ratiob (%) Frequency of Dc value (P < 0.05) Means
  locus pairs   0–0.2 0.2–0.4 0.4-0.6 0.6-0.8 0.8-1.0 of D
POP1 927 2.7 14 154 195 173 391 0.692
POP2 1330 3.9 3 159 316 406 446 0.673
POP3 1137 3.3 0 31 169 349 588 0.786
POP4 1078 3.2 1 50 181 336 510 0.751
POP5 833 2.4 0 24 153 207 449 0.787
  5305        
  1. aLD means linkage disequilibrium
  2. bRatio between the number of significant LD locus pairs and total number of LD locus pairs
  3. cD′ means standardized disequilibrium coefficients