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Table 3 Comparison of D′ values for pair-wise SSR loci in each subpopulation

From: Favorable alleles mining for gelatinization temperature, gel consistency and amylose content in Oryza sativa by association mapping

Cluster

No. of significant LDa

Ratiob (%)

Frequency of Dc value (P < 0.05)

Means

 

locus pairs

 

0–0.2

0.2–0.4

0.4-0.6

0.6-0.8

0.8-1.0

of D

POP1

927

2.7

14

154

195

173

391

0.692

POP2

1330

3.9

3

159

316

406

446

0.673

POP3

1137

3.3

0

31

169

349

588

0.786

POP4

1078

3.2

1

50

181

336

510

0.751

POP5

833

2.4

0

24

153

207

449

0.787

 

5305

       
  1. aLD means linkage disequilibrium
  2. bRatio between the number of significant LD locus pairs and total number of LD locus pairs
  3. cD′ means standardized disequilibrium coefficients