Model | p a | ℓ b | Estimates of Parameters | Positive Selected Sites |
---|---|---|---|---|
M0: one-ratio | 1 | − 7710.25 | ω0 = 0.0519 | NAc |
Branch model | ||||
Two-ratios | 2 | − 7708.92 | ω0 = 0.0513, ω1 = 0.182 | None |
Site-specific model | ||||
M1a: neutral | 2 | − 7606.65 | p0 = 0.938 (p1 = 0.0620) | NAc |
ω0 = 0.0409 (ω1 = 1.000) | ||||
M2a:selection | 4 | −7606.65 | p0 = 0.938, p1 = 0.0620 (p2 = 0.000) | 397S (P = 0.57) |
ω0 = 0.0409 (ω1 = 1.000), ω2 = 1.000 | ||||
M3: discrete (K = 2) | 3 | − 7500.24 | p0 = 0.776 (p1 = 0.224) | None |
ω0 = 0.0131, ω1 = 0.219 | ||||
M3: discrete (K = 3) | 5 | − 7487.11 | p0 = 0.705, p1 = 0.240 (p2 = 0.0549) | None |
ω0 = 0.009, ω1 = 0.131, ω2 = 0.446 | ||||
M7: beta | 2 | − 7490.53 | p = 0.254 q = 3.432 | NAc |
M8: beta&ω > 1 | 4 | − 7488.21 | p0 = 0.989 (p1 = 0.0108) | None |
p = 0.281, q = 4.425, ωs = 1.000 | ||||
Branch-site model | ||||
Model A | 3 | − 7604.85 | p0 = 0.878, p1 = 0.0484, | Foreground lineage ω2 (BEBd): |
(p2a + p2b = 0.0736) | 56 V 119H 189 K 254D | |||
ω2 = 1.000 | (0.70 < P < 0.95) | |||
Model B | 5 | − 7498.40 | p0 = 0.620, | Foreground lineage ω2 (NEBd): |
p1 = 0.183 (p2a + p2b = 0.197) | 119H 254D (P > 0.95*) | |||
ω0 = 0.0125, ω1 = 0.216, | Foreground lineage ω2 (BEBd): | |||
ω2 = 1.197 | 56 V 119H 189 K 254D | |||
(0.50 < P < 0.85) |