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Table 2 Gene expression in Znt7-KO/129P1-L proximal congenic region (47.4–64.4 Mb)

From: Subcongenic analysis of a quantitative trait locus affecting body weight and glucose metabolism in zinc transporter 7 (znt7)-knockout mice

Mb Gene Symbol Gene Name mRNA expression in SC fat (RPKM) mRNA expression in SC fat (RT-PCR) Differential expression
48.78 Zdhhc13 zinc finger, DHHC domain containing 13 3.564 yes no
48.83 Csrp3 cysteine and glycine-rich protein 3 N.D. ̶ ̶
48.86 E2f8 E2F transcription factor 8 0.631 yes no
48.95 Nav2 neuron navigator 2 0.803 yes no
49.63 Dbx1 developing brain homeobox 1 N.D. ̶ ̶
49.75 Htatip2 HIV-1 tat interactive protein 2 5.552 yes yes**
49.77 Prmt3 protein arginine N-methyltransferase 3 5.464 yes no
49.90 Slc6a5 solute carrier family 6 (neurotransmitter transporter, glycine), member 5 N.D. ̶ ̶
49.97 Nell1 NEL-like 1 0.941 yes no
50.59 4933405O20Rik RIKEN cDNA 4933405O20 gene n/a yes no
51.51 Ano5 anoctamin 5 0.126 yes no
51.62 Slc17a6 solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6 N.D. no ̶
51.86 Fancf Fanconi anemia, complementation group F n/a no ̶
51.86 Gas2 growth arrest specific 2 0.608 yes no
51.99 Svip small VCP/p97-interacting protein 1.731 yes no
52.01 1700015G11Rik RIKEN cDNA 1700015G11 gene N.D. ̶ ̶
54.83 Luzp2 leucine zipper protein 2 N.D. ̶ ̶
55.76 Siglech sialic acid binding Ig-like lectin H 0.609 yes no
55.79 Tubgcp5 tubulin, gamma complex associated protein 5 1.234 yes no
55.84 Cyfip1 cytoplasmic FMR1 interacting protein 1 9.187 yes no
55.93 Nipa2 non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human) 2.822 yes no
55.97 Nipa1 non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human) 4.38 yes yes*
56.05 Herc2 hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2 5.275 yes no
56.23 Oca2 oculocutaneous albinism II N.D. no
58.65 Atp10a ATPase, class V, type 10A 4.05 yes no
59.22 Ube3a ubiquitin protein ligase E3A 2.997 yes no
59.98 Snurf SNRPN upstream reading frame 9.687 yes no
59.98 Snrpn small nuclear ribonucleoprotein N 8.022 yes no
62.34 Ndn necdin n/a yes no
62.37 Magel2 melanoma antigen, family L, 2 n/a yes no
62.41 Mkrn3 makorin, ring finger protein, 3 n/a yes no
62.46 Peg12 paternally expressed 12 n/a yes no
63.09 Chrna7 cholinergic receptor, nicotinic, alpha polypeptide 7 0.121 yes no
63.44 Otud7a OTU domain containing 7A 0.017 yes no
63.88 Klf13 Kruppel-like factor 13 16.442 yes no
63.91 E030018B13Rik RIKEN cDNA E030018B13 gene 0.147 yes yes**
64.15 Trpm1 transient receptor potential cation channel, subfamily M, member 1 0.036 no ̶
  1. Mouse ENCODE transcriptome data (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA66167/); A cluster of brain-specific expressed Mrgp (MAS-related GPR) genes (47.33–48.64 Mb) are not listed in the Table, including Mrgpra1, Mrgpra3, Mrgpra4, Mrgpra2a, Mrgpra2b, Mrgprb1, Mrgprb2, Mrgprb3, Mrgprb4, Mrgprb5, Mrgprb8, Mrgprx1, and Mrgprx2; RPKM reads per kilobase per million reads placed, SC Subcutaneous fat, N.D. not detected, n.d. not determined, n/a not available; *p < 0.05; **p < 0.01 (B6.129P1-7LZnt7-KO vs B6 Znt7-KO)