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Table 2 Gene expression in Znt7-KO/129P1-L proximal congenic region (47.4–64.4 Mb)

From: Subcongenic analysis of a quantitative trait locus affecting body weight and glucose metabolism in zinc transporter 7 (znt7)-knockout mice

Mb

Gene Symbol

Gene Name

mRNA expression in SC fat (RPKM)†

mRNA expression in SC fat (RT-PCR)

Differential expression

48.78

Zdhhc13

zinc finger, DHHC domain containing 13

3.564

yes

no

48.83

Csrp3

cysteine and glycine-rich protein 3

N.D.

̶

̶

48.86

E2f8

E2F transcription factor 8

0.631

yes

no

48.95

Nav2

neuron navigator 2

0.803

yes

no

49.63

Dbx1

developing brain homeobox 1

N.D.

̶

̶

49.75

Htatip2

HIV-1 tat interactive protein 2

5.552

yes

yes**

49.77

Prmt3

protein arginine N-methyltransferase 3

5.464

yes

no

49.90

Slc6a5

solute carrier family 6 (neurotransmitter transporter, glycine), member 5

N.D.

̶

̶

49.97

Nell1

NEL-like 1

0.941

yes

no

50.59

4933405O20Rik

RIKEN cDNA 4933405O20 gene

n/a

yes

no

51.51

Ano5

anoctamin 5

0.126

yes

no

51.62

Slc17a6

solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6

N.D.

no

̶

51.86

Fancf

Fanconi anemia, complementation group F

n/a

no

̶

51.86

Gas2

growth arrest specific 2

0.608

yes

no

51.99

Svip

small VCP/p97-interacting protein

1.731

yes

no

52.01

1700015G11Rik

RIKEN cDNA 1700015G11 gene

N.D.

̶

̶

54.83

Luzp2

leucine zipper protein 2

N.D.

̶

̶

55.76

Siglech

sialic acid binding Ig-like lectin H

0.609

yes

no

55.79

Tubgcp5

tubulin, gamma complex associated protein 5

1.234

yes

no

55.84

Cyfip1

cytoplasmic FMR1 interacting protein 1

9.187

yes

no

55.93

Nipa2

non imprinted in Prader-Willi/Angelman syndrome 2 homolog (human)

2.822

yes

no

55.97

Nipa1

non imprinted in Prader-Willi/Angelman syndrome 1 homolog (human)

4.38

yes

yes*

56.05

Herc2

hect (homologous to the E6-AP (UBE3A) carboxyl terminus) domain and RCC1 (CHC1)-like domain (RLD) 2

5.275

yes

no

56.23

Oca2

oculocutaneous albinism II

N.D.

no

–

58.65

Atp10a

ATPase, class V, type 10A

4.05

yes

no

59.22

Ube3a

ubiquitin protein ligase E3A

2.997

yes

no

59.98

Snurf

SNRPN upstream reading frame

9.687

yes

no

59.98

Snrpn

small nuclear ribonucleoprotein N

8.022

yes

no

62.34

Ndn

necdin

n/a

yes

no

62.37

Magel2

melanoma antigen, family L, 2

n/a

yes

no

62.41

Mkrn3

makorin, ring finger protein, 3

n/a

yes

no

62.46

Peg12

paternally expressed 12

n/a

yes

no

63.09

Chrna7

cholinergic receptor, nicotinic, alpha polypeptide 7

0.121

yes

no

63.44

Otud7a

OTU domain containing 7A

0.017

yes

no

63.88

Klf13

Kruppel-like factor 13

16.442

yes

no

63.91

E030018B13Rik

RIKEN cDNA E030018B13 gene

0.147

yes

yes**

64.15

Trpm1

transient receptor potential cation channel, subfamily M, member 1

0.036

no

̶

  1. †Mouse ENCODE transcriptome data (https://www.ncbi.nlm.nih.gov/bioproject/PRJNA66167/); A cluster of brain-specific expressed Mrgp (MAS-related GPR) genes (47.33–48.64 Mb) are not listed in the Table, including Mrgpra1, Mrgpra3, Mrgpra4, Mrgpra2a, Mrgpra2b, Mrgprb1, Mrgprb2, Mrgprb3, Mrgprb4, Mrgprb5, Mrgprb8, Mrgprx1, and Mrgprx2; RPKM reads per kilobase per million reads placed, SC Subcutaneous fat, N.D. not detected, n.d. not determined, n/a not available; *p < 0.05; **p < 0.01 (B6.129P1-7LZnt7-KO vs B6 Znt7-KO)