Table 1 SNP markers that explained the greatest additive genetic variance for meat tenderness in Nelore cattle
SNP marker | BTA | Position (bp) | Allele frequencies (effectsa) | Var (kg2) | Gene | |
|---|---|---|---|---|---|---|
rs109294639 | 3 | 7,384,182 | T = 0.094 (− 0.40 ± 0.08) | C = 0.906 (0.40 ± 0.08) | 0.027 | NOS1AP (intron1) |
rs134499129 | 3 | 7,390,035 | A = 0.163 (− 0.51 ± 0.06) | G = 0.837 (0.51 ± 0.06) | 0.072 | NOS1AP (intron1) |
rs41595711 | 3 | 7,391,544 | T = 0.185 (− 0.30 ± 0.06) | C = 0.815 (0.30 ± 0.06) | 0.027 | NOS1AP (intron1) |
rs43490295 | 4 | 1,008,553 | G = 0.120 (− 0.37 ± 0.07) | A = 0.880 (0.37 ± 0.07) | 0.028 | – |
rs137367597 | 9 | 1,116,610 | C = 0.135 (−0.34 ± 0.07) | A = 0.865 (0.34 ± 0.07) | 0.028 | – |
rs41623448 | 10 | 20,486,971 | C = 0.064 (−0.73 ± 0.09) | T = 0.936 (0.73 ± 0.09) | 0.063 | near TBCD21 |
rs136174419 | 11 | 50,332,078 | A = 0.112 (−0.37 ± 0.07) | G = 0.888 (0.37 ± 0.07) | 0.028 | near SUCLG1 |
rs42732955 | 11 | 50,406,682 | A = 0.124 (−0.39 ± 0.07) | G = 0.876 (0.39 ± 0.07) | 0.032 | SUCLG1 (intron1) |