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Table 6 Evolution of the mean correlations between true and imputed genotypes depending on the presence or absence of dams in the reference population

From: Design of low density SNP chips for genotype imputation in layer chicken

Ref. pop.

G3 Imputation

G2♂ (D1)

G2 (D2)

SNP chip

Corr.

SE

Corr.

SE

10Kequi

0.953

0.076

0.983

0.036

3Kequi

0.868

0.136

0.946

0.068

LD0.5

0.973

0.047

0.989

0.026

LD0.05

0.892

0.107

0.953

0.024