From: Design of low density SNP chips for genotype imputation in layer chicken
Ref. pop. | G2 Imputation | G3 Imputation | ||||||||
---|---|---|---|---|---|---|---|---|---|---|
G1 (B) | G0G1 (C) | G2♂ (D1) | G1G2♂ (E) | G0G1G2♂(F) | ||||||
SNP chip | Corr. | SE | Corr. | SE | Corr. | SE | Corr. | SE | Corr. | SE |
10Kequi | 0.961 | 0.063 | 0.973 | 0.047 | 0.953 | 0.076 | 0.965 | 0.056 | 0.974 | 0.043 |
3Kequi | 0.884 | 0.113 | 0.914 | 0.085 | 0.868 | 0.136 | 0.896 | 0.103 | 0.912 | 0.087 |
LD0.5 | 0.975 | 0.045 | 0.981 | 0.038 | 0.973 | 0.047 | 0.978 | 0.039 | 0.983 | 0.032 |
LD0.05 | 0.899 | 0.057 | 0.921 | 0.083 | 0.892 | 0.107 | 0.914 | 0.081 | 0.929 | 0.068 |