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Table 3 Summary of significant chromosome regions for number mummified (NM) at genomic level in Large White population

From: A genome wide association study for the number of animals born dead in domestic pigs

Parity

SSC

Range (Mb)

Number

Position(bp)

Alleles

P value

Candidate Gene

2

1

32.30–32.34

2

32,322,537

A/G

1.10E-07

AKAP7

2

1

185.49–185.53

3

185,506,783

C/A

1.04E-07

 

2

4

133.07–133.11

2

133,090,486

A/G

1.90E-07

 

3

2

159.12–159.35

13

159,334,109

C/T

9.58E-14

 

3

18

15.29–15.42

8

15,306,205

A/G

1.05E-11

EXOC4

4

2

53.53–53.57

5

53,550,664

A/T

8.13E-08

 

4

5

36.73–36.77

5

36,749,866

T/G

8.50E-08

 

4

5

49.74–53.88

28

49,763,855

A/G

2.89E-08

SOX5/ST8SIA1/KCNJ8/ABCC9/GYS2/SPX/GOLT1B/PLEKHA5

4

7

116.70–116.74

2

116,719,034

G/T

1.32E-10

SYNE3

4

15

62.98–63.02

14

63,000,645

A/T

9.45E-10

 

5

2

14.95–14.99

7

14,966,625

G/A

1.06E-09

AGBL2/MTCH2

5

2

52.21–52.25

2

52,227,328

T/C

2.76E-09

LOC100525099

5

3

27.64–27.90

4

27,657,943

T/A

1.68E-08

 

5

4

62.24–62.28

2

62,259,407

A/C

6.18E-13

STAU2

5

7

121.12–121.16

5

121,138,988

C/G

2.16E-08

YY1

5

8

5.54–5.58

2

5,558,816

A/G

6.84E-08

 

5

10

21.60–21.64

3

21,623,235

C/T

3.25E-15

 

5

15

52.89–52.93

4

52,912,314

T/C

1.44E-09

 

5

17

50.86–50.90

2

50,880,718

T/G

2.49E-10

STAU1

  1. Range Range of significant chromosome region, Number Number of SNP involved, Position Position of top SNP, Alleles Alleles of top SNP, Candidate Gene Gene found in the range