Skip to main content

Table 2 Summary of significant chromosome regions for number mummified (NM) at genomic level in Landrace population

From: A genome wide association study for the number of animals born dead in domestic pigs

Parity

SSC

Range (Mb)

Number

Position(bp)

Alleles

P value

Candidate Gene

1

2

51.85–55.30

7

53,226,790

G/C

1.17E-10

OR2T6

1

12

37.88–37.92

2

37,895,292

C/T

9.23E-09

 

1

12

45.64–45.68

2

45,662,205

T/C

1.84E-08

TAOK1

2

11

64.1–64.17

2

64,146,608

C/T

1.03E-07

ABCC4

2

X

112.6–112.64

6

112,615,739

C/G

1.51E-08

ZIC3

3

1

141.79–141.83

2

141,813,666

T/A

2.47E-08

 

3

1

295.95–295.99

6

295,973,126

G/A

1.59E-08

 

3

2

40.27–40.31

2

40,285,249

T/C

2.61E-12

ZDHHC13

3

10

73.77–73.81

4

73,789,449

C/T

1.42E-09

 

3

11

1.28–7.13

99

7,114,076

A/G

5.25E-14

HMGB1/CDK8/SAP18/SKA3/MIPEP/SPATA13/ MTMR6/NUP58/ATP8A2

3

X

69.58–69.62

4

69,596,000

G/A

1.41E-07

 
  1. Range Range of significant chromosome region, Number Number of SNP involved, Position Position of top SNP, Alleles Alleles of top SNP, Candidate Gene Gene found in the range