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Table 2 SNP markers significantly associated with wood quality traits in the association population (n = 125)

From: Single-nucleotide polymorphisms(SNPs) in a sucrose synthase gene are associated with wood properties in Catalpa fargesii bur

Traits

Maker

Position

Polymorphism

P value

Q value

r2(%)

Wood basic density

SNP5

Intron3

[C:T]

0.0363

0.0323

5.62%

SNP6

Intron3

[C:T]

0.0494

0.0368

5.11%

SNP9

Exon5

[G:T] NS

0.0302

0.0314

5.93%

SNP27

Exon9

[A:G]

0.0431

0.0259

5.37%

SNP30

Exon9

[C:T] NS

0.0227

0.0149

6.39%

Pore rates

SNP37

Exon3

[A:G]

0.0175

0.0427

8.09%

Cell wall percentages

SNP34

Exon10

[A:C]NS

0.0355

0.0363

7.34%

Radial lumen diameter

SNP23

Exon3

[A:G]

0.0042

0.0030

9.26%

SNP34

Exon10

[A:C]NS

0.0400

0.0371

7.13%

Chordwise lumen diameter

SNP7

Intron3

[C:T]

0.0336

0.0398

7.47%

SNP8

Intron4

[G:T]

0.0023

0.0404

12.10%

SNP16

Exon7

[C:T]

0.0286

0.0352

7.76%

Radial fiber central cavity diameter

SNP23

Exon3

[A:G]

0.0124

0.0386

7.55%

Chordwise fiber central cavity diameter

SNP7

Intron3

[C:T]

0.0481

0.0343

6.86%

SNP8

Intron4

[G:T]

0.0077

0.0226

10.17%

SNP16

Exon7

[C:T]

0.0369

0.0420

5.38%

Average fiber central cavity diameter

SNP23

Exon3

[A:G]

0.0124

0.0386

7.55%

  1. Ns nonsynonymous polymorphism, r2 percentage of phenotypic variance