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Table 2 Characteristics of the 20 polymorphic SSR markers developed for genetic diversity analyses of P. edulis

From: Genetic diversity and population structure analyses of Plectranthus edulis (Vatke) Agnew collections from diverse agro-ecologies in Ethiopia using newly developed EST-SSRs marker system

Primer / locus name

GenBank ANSSa

SSR motif (5′ to 3′)

forward primer (5′ to 3′)

reverse primer (5′ to 3′)

Expected allele size (bp)

Observed allele size range (bp)

Ta (°C)

PE_01

GB|JZ730850.1

(TC)9

TCACCGCAGTTTTCAGTCTCTA

ATGAGATTCGCCATAGGTTTGT

102

122–146

59

PE_02

GB|JZ730431.1

(AAG)6

TGAATCTGCAAAGACATCTGCT

AACTGAGACAACTCCATTGACG

114

108–126

57

PE_03

GB|JZ730426.1

(TA)10

GAGACGACGACCAATGTTGTTA

CTCTCTATCACTCCTGACGGCT

125

106–142

56

PE_04

GB|JZ732709.1

(ACACCC)5

GGGGAATTAGAGATGGAAAGATAGA

TTGAGGGTGTGAAGTGGTACAG

131

137–143

57

PE_05

GB|JZ732789.1

(TG)10

GCCGTATCTCCATTTGTTGATT

TCCATGCTCCTCACACATTATC

141

140–168

57

PE_06

GB|JZ731502.1

(AC)6

GCTTACGCCAAGAACTGAAACT

AATAGCAATCTCTTTCCCTCCC

164

162–182

55

PE_07

GB|JZ730947.1

(CTC)4

GTTGGACGACTGGGTTTTATGT

GAATGACGCTAGTTTGCTGTTG

314

319–340

55

PE_08

GB|JZ731328.1

(GCT)6

CCAACAGCAATCCATATTACCA

ATTTCTCAAGTCAGTCCGAGGT

172

162–189

57

PE_09

GB|JZ732633.1

(CAG)6

AACCAAATGACAGGAGCATCTT

CAATTTCTTCATACTGGGTGGC

184

180–206

55

PE_10

GB|JZ730151.1

(CTT)5

GGGTAACGATTTGAATAATGCG

GTGAAGCGGGATCTACACTGA

188

176–200

52

PE_11

GB|JZ730075.1

(AGAGA)4

GTCAGCCTTTCTCTCTCGTCTC

AGGGGAGTGTGTTATCAAATGG

223

249–264

56

PE_12

GB|JZ730223.1

(AGC)6

GACCATCGGTAAGGAGAACTTG

GGATATGAGCTGGATAGCTGGT

226

213–243

55

PE_13

GB|JZ731331.1

(CAC)5

GCAAAAGTTCTACCAGCGTTTC

GGTTTGTTGATCCCAACGTAAT

229

242–251

57

PE_14

GB|JZ731120.1

(GAA)10

AATTACTTTCATGTCCAACGCC

TTTTCATCACTACCATCCCAGTC

229

228–243

55

PE_15

GB|JZ731840.1

(TGT)5

AGTTGAGATTGTACTCCACGTTGT

CTACTTCAGTTCCGGCCTCTTA

260

233–260

57

PE_16

GB|JZ732555.1

(AC)9

GGCGATATTCAAGAAAGCAACT

TCTTTTCACGCTTCCATCTCTT

355

319–339

57

PE_17

GB|JZ729809.1

(GA)8

GGGGCTTTTCTTGTTTGAAGAT

ATTGGAGGCAACTCATCAGAAT

361

370–382

57

PE_18

GB|JZ732589.1

(GA)9

ATGAAGAGTGAAGAGGCTGGAG

AGGAGCAAGCAAATAGAAATCG

306

304–322

57

PE_19

GB|JZ732378.1

(TGC)5

GTGTACATGCCATAGAATGAGT

GACTTCATCATATACGGCGGTT

167

180–192

57

PE_20

GB|JZ730154.1

(TGC)5

TACTTTATGGCAGAGAATGCGA

CTTGAGAGCCCTGAGACTTCAT

178

200–227

57

  1. aANSS Accession number of source sequences