Table 2 Results for simulation study: Long reads. The proportions of reads correctly (TP) and incorrectly (FP) assigned to taxonomy tree at different ranks of two methods with average length of 500Â bp
From: An improved statistical model for taxonomic assignment of metagenomics
| Â | simLC | simMC | simHC | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|
TAMER | TADIP | TAMER | TADIP | TAMER | TADIP | |||||||
Rank | TP | FP | TP | FP | TP | FP | TP | FP | TP | FP | TP | FP |
Species | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 0.9229 | 0.1731 | 0.9229 | 0.1004 | 0.9565 | 0.0273 | 0.9565 | 0.0165 |
Genus | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 0.9233 | 0.1731 | 0.9233 | 0.0999 | 0.9644 | 0.0194 | 0.9644 | 0.0087 |
Family | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 0.9995 | 0.0965 | 0.9995 | 0.0767 | 0.9838 | 0.0000 | 0.9838 | 0.0000 |
Order | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 0.9995 | 0.0965 | 0.9995 | 0.0766 | 0.9838 | 0.0000 | 0.9838 | 0.0000 |
Class | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 1.0000 | 0.0960 | 1.0000 | 0.0747 | 0.9838 | 0.0000 | 0.9838 | 0.0000 |
Phylum | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 1.0000 | 0.0960 | 1.0000 | 0.0747 | 0.9838 | 0.0000 | 0.9838 | 0.0000 |
Kingdom | 1.0000 | 0.0000 | 1.0000 | 0.0000 | 1.0000 | 0.0960 | 1.0000 | 0.0747 | 0.9838 | 0.0000 | 0.9838 | 0.0000 |