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Table 2 Results for simulation study: Long reads. The proportions of reads correctly (TP) and incorrectly (FP) assigned to taxonomy tree at different ranks of two methods with average length of 500 bp

From: An improved statistical model for taxonomic assignment of metagenomics

  simLC simMC simHC
TAMER TADIP TAMER TADIP TAMER TADIP
Rank TP FP TP FP TP FP TP FP TP FP TP FP
Species 1.0000 0.0000 1.0000 0.0000 0.9229 0.1731 0.9229 0.1004 0.9565 0.0273 0.9565 0.0165
Genus 1.0000 0.0000 1.0000 0.0000 0.9233 0.1731 0.9233 0.0999 0.9644 0.0194 0.9644 0.0087
Family 1.0000 0.0000 1.0000 0.0000 0.9995 0.0965 0.9995 0.0767 0.9838 0.0000 0.9838 0.0000
Order 1.0000 0.0000 1.0000 0.0000 0.9995 0.0965 0.9995 0.0766 0.9838 0.0000 0.9838 0.0000
Class 1.0000 0.0000 1.0000 0.0000 1.0000 0.0960 1.0000 0.0747 0.9838 0.0000 0.9838 0.0000
Phylum 1.0000 0.0000 1.0000 0.0000 1.0000 0.0960 1.0000 0.0747 0.9838 0.0000 0.9838 0.0000
Kingdom 1.0000 0.0000 1.0000 0.0000 1.0000 0.0960 1.0000 0.0747 0.9838 0.0000 0.9838 0.0000