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Table 3 Genome-wide significant SNPs for CE and suggestive genome-wide significant SNPs for BT and NG

From: A genome-wide association study for harness racing success in the Norwegian-Swedish coldblooded trotter reveals genes for learning and energy metabolism

SNP

Analysis

Location (ECA:bp)

MAF

β

SE

Var (%)

Nearest gene

Distance to nearest gene (bp)

Raw p-value

AX-104828170

CE

28:20,006,740

0.018

−3.380

0.552

3.85

NDUFA12

114,732

9.01E-10

AX-103147507

CE

28:22,153,465

0.005

−5.762

1.011

3.27

ENSECAG00000025907

46,196

1.20E-08

AX-104611735

CE

6:47,132,529

0.015

−3.407

0.599

3.16

PDE3A

0

1.28E-08

AX-104865129

CE

16:18,366,321

0.008

−4.488

0.798

3.17

ENSECAG00000003087/PROK2

138,149/138,791

1.87E-08

AX-104494389

CE

6:20,020,914

0.006

−4.557

0.825

3.32

INPP5D

0

3.36E-08

AX-103248294

CE

6:49,512,490

0.016

−3.166

0.582

3.11

SOX5

0

5.28E-08

AX-103090138

CE

6:42,063,985

0.018

−3.007

0.559

2.46

PLBD1

3191

7.48E-08

AX-104711589

CE

6:41,462,481

0.012

−3.497

0.657

2.59

GRIN2B

0

9.99E-08

AX-104307051

CE

6:41,329,519

0.012

−3.474

0.657

2.67

GRIN2B

0

1.21E-07

AX-104144838

NG

23:23,333,501

0.278

−0.214

0.046

1.51

ENSECAG00000023609

187,643

3.18E-06

AX-104568609

NG

1:159,285,045

0.004

−1.343

0.293

1.14

ENSECAG00000003696/ENSECAG00000022264

19,813/25,804

4.52E-06

AX-102982528

NG

23:23,324,996

0.412

−0.186

0.041

1.27

ENSECAG00000023609

179,138

6.74E-06

AX-103734745

NG

29:24,530,437

0.453

−0.176

0.040

1.29

ENSECAG00000004576

944,126

8.67E-06

AX-104373992

BT

1:162,993,722

0.016

3.289

0.655

1.79

ENSECAG00000023062/ENSECAG00000008721

32,728/51,254

5.10E-07

AX-103261370

BT

23:22,522,071

0.409

−0.910

0.183

0.87

DOCK8

0

6.49E-07

AX-104219924

BT

17:19,525,955

0.279

0.946

0.197

2.24

WDFY2

0

1.57E-06

AX-104634248

BT

23:21,857,316

0.108

1.346

0.284

1.21

PIP5K1B/FAM122A

14,893/18,794

2.20E-06

AX-103287280

BT

23:21,064,571

0.117

1.270

0.268

1.49

PTAR1

43,300

2.22E-06

AX-104645782

BT

17:19,318,167

0.258

0.951

0.201

2.21

ATP7B

0

2.32E-06

AX-103762427

BT

23:22,461,979

0.154

−1.156

0.245

1.37

DOCK8

0

2.45E-06

AX-103530176

BT

23:22,464,604

0.156

−1.139

0.246

1.25

DOCK8

0

3.49E-06

AX-103445942

BT

1:151,919,692

0.012

3.600

0.777

1.39

ENSECAG00000012236/ENSECAG00000013533

74,605/78,356

3.63E-06

AX-104538418

BT

17:21,083,126

0.279

0.905

0.196

2.29

KCNRG

0

3.99E-06

AX-104268231

BT

23:21,689,609

0.385

−0.823

0.179

0.79

PIP5K1B

0

4.25E-06

AX-102964033

BT

23:22,423,197

0.121

−1.259

0.275

0.95

DOCK8

5699

4.59E-06

AX-104117851

BT

7:65,266,179

0.010

3.724

0.821

1.76

ENSECAG00000007398

162,661

5.78E-06

AX-104642194

BT

31:14,300,483

0.006

4.612

1.021

1.37

MTRF1L/FBXO5

108/14,491

6.31E-06

AX-103166989

BT

23:22,496,787

0.116

−1.270

0.283

0.99

DOCK8

0

7.07E-06

AX-103803214

BT

2:21,466,714

0.049

1.725

0.386

1.82

AGO1

2494

7.72E-06

AX-104450418

BT

2:21,311,680

0.087

1.351

0.304

1.93

TEKT2/ADPRHL2

10,587/14,440

9.00E-06

AX-103305676

BT

25:26,866,219

0.019

2.590

0.584

1.67

OR1L3

492

9.11E-06

AX-104591507

BT

17:20,813,164

0.249

0.898

0.203

1.84

KCNRG

227,34

9.36E-06

  1. CE career earnings, BT Best km time, NG number of gallop, MAF Minor allele frequency, β Estimated allele substitution effect, Var (%) Percentage of phenotypic variance explained
  2. Red line = Bonferroni threshold (P < 1.39 × 10−7)
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BMC Genomic Data

ISSN: 2730-6844

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