Table 4 DArTs linked to leaf rolling (RL) with known sequences, annotated in NCBI
From: Putative candidate genes responsible for leaf rolling in rye (Secale cereale L.)
Marker | NCBI annotation | |||||||||
|---|---|---|---|---|---|---|---|---|---|---|
Marker | DArT sequence length (bp) | Chrom. | Description | Species | Max score | Total score | Query cover | E value | Identity | Accession |
XrPt506905 | 665 | 3R | subtilisin-like protease SBT2.2 (LOC109761160), mRNA | Aegilops tauschii subsp. tauschii | 97 | 97 | 8% | 6.00E-16 | 95% | XM_020319955.1 |
XrPt507717 | 678 | 3R | protein LIKE COV 2 (LOC109734806), mRNA | Aegilops tauschii subsp. tauschii | 279 | 279 | 24% | 5.00E-71 | 96% | XM_020293989.1 |
XrPt507473 | 599 | 3R | Fhb1 region genomic sequence | Triticum aestivum cv Sumai 3 | 60 | 60 | 5% | 7.00E-05 | 97% | KX907434.1 |
XrPt401081 XrPt398502 | 545 | 3R | jasmonate O-methyltransferase-like (LOC109744228), mRNA | Aegilops tauschii subsp. tauschii | 359 | 692 | 86% | 5.00E-95 | 95% | XM_020303320.1 |
XrPt508197 | 720 | 5R | RGA1-G gene, complete cds | Secale cereale | 220 | 358 | 19% | 4.00E-53 | 96% | KT725818.1 |
XrPt410783 | 463 | 5R | cancer-related nucleoside-triphosphatase (LOC109750338), mRNA | Aegilops tauschii subsp. tauschii | 527 | 624 | 75% | 1.00E-145 | 94% | XM_020309304.1 |
XrPt401454 | 218 | 5R | LRR receptor-like serine/threonine-protein kinase FEI 1 (LOC109774869), mRNA | Aegilops tauschii subsp. tauschii | 57 | 57 | 13% | 3.00E-04 | 100% | XM_020333663.1 |
XrPt400297 | 773 | 5R | serine/threonine-protein kinase AFC1-like (LOC109779169), transcript variant X4, mRNA | Aegilops tauschii subsp. tauschii | 228 | 282 | 19% | 2.00E-55 | 100% | XM_020337784.1 |
XrPt402531 | 422 | 5R | transcription factor bHLH79-like (LOC109737374), mRNA | Aegilops tauschii subsp. tauschii | 99 | 99 | 13% | 1.00E-16 | 98% | XM_020296517.1 |
XrPt402607 | 551 | 7R | polyadenylate-binding protein-interacting protein 7-like (LOC109738116), transcript variant X4, mRNA | Aegilops tauschii subsp. tauschii | 470 | 470 | 60% | 2.00E-128 | 93% | XM_020297211.1 |
XrPt401480 | 561 | 7R | tubby-like F-box protein 12 (LOC109763585), transcript variant X3, mRNA | Aegilops tauschii subsp. tauschii | 601 | 601 | 65% | 8.00E-168 | 96% | XM_020322436.1 |
XrPt390593 | 451 | 7R | vegetative cell wall protein gp1-like (LOC109748681), transcript variant X4, mRNA | Aegilops tauschii subsp. tauschii | 57 | 57 | 6% | 6.00E-04 | 100% | XM_020307705.1 |