From: Copy number variations in Friesian horses and genetic risk factors for insect bite hypersensitivity
 |  |  |  |  |  | CNV frequency |  |  |  |  |  | |||||
---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
 |  |  |  |  |  | Case | Control |  |  |  |  |  | ||||
CNVR ID | ECAa | Start (bp) | End (bp) | Size (bp) | State | Gain | Loss | Total | Gain | Loss | Total | P-value Gain | P-value Loss | P-value | ORb | Genec |
CNVR_1144_1 | 4 | 23,383,774 | 23,505,444 | 121,671 | Gain | 1 | 0 | 1 | 9 | 0 | 9 | 0.033 |  | 0.0332 | 0.100.01–0.84 |  |
CNVR_1296_1 | 4 | 79,687,222 | 79,957,793 | 270,572 | Gain | 11 | 0 | 11 | 26 | 0 | 26 | 0.009 |  | 0.0092 | 0.360.17–0.78 | SPAM1 |
CNVR_2035_1 | 8 | 3,638,239 | 3,783,874 | 145,636 | Mixed | 7 | 2 | 9 | 1 | 1 | 2 | 0.046 | 0.580 | 0.0367 | 5.401.11–26.3 | IGLV8–61, ENSECAG00000014327 |
CNVR_2452_1 | 10 | 12,948,489 | 13,075,518 | 127,030 | Mixed | 15 | 10 | 25 | 6 | 0 | 6 | 0.022 | 0.982 | 0.0003 | 5.922.24–15.7 | AC011513.3, CEACAM1, CEACAM3-CEACAM8, PSG1-PSG9, PSG11 |
CNVR_2685_1 | 11 | 41,743,465 | 41,832,225 | 88,761 | Mixed | 8 | 5 | 13 | 2 | 2 | 4 | 0.055 | 0.265 | 0.0245 | 3.821.19–12.3 |  |
CNVR_2758_1 | 12 | 19,366,263 | 19,527,441 | 161,179 | Gain | 14 | 0 | 14 | 2 | 0 | 2 | 0.004 |  | 0.0038 | 9.862.09–46.5 | OR4D10, OR4D11, ENSECAG00000008771 |
CNVR_2979_1 | 14 | 64,375,388 | 64,516,633 | 141,246 | Gain | 3 | 0 | 3 | 11 | 0 | 11 | 0.040 |  | 0.0395 | 0.250.07–0.94 |  |
CNVR_4066 | 20 | 20,271 | 503,862 | 483,592 | Mixed | 1 | 0 | 1 | 7 | 1 | 8 | 0.064 | 0.987 | 0.0450 | 0.110.01–0.95 |  |
CNVR_4114_1 | 20 | 24,230,088 | 24,296,409 | 66,322 | Mixed | 6 | 0 | 6 | 19 | 0 | 19 | 0.010 |  | 0.0100 | 0.280.10–0.74 | BTN3A1, BTN3A2, BTN3A3 |
CNVR_4120_1 | 20 | 26,392,472 | 26,531,248 | 138,777 | Gain | 25 | 0 | 25 | 46 | 0 | 46 | 0.003 |  | 0.0034 | 0.410.23–0.74 | ENSECAG00000001951, ENSECAG00000019806, ENSECAG00000002019, ENSECAG00000002140, ENSECAG00000002328, ENSECAG00000000865 |
CNVR_4132_1 | 20 | 29,805,544 | 29,821,078 | 15,535 | Gain | 23 | 0 | 23 | 9 | 0 | 9 | 0.007 |  | 0.0074 | 3.111.36–7.12 |  |
CNVR_4140_1 | 20 | 30,493,889 | 30,523,455 | 29,567 | Mixed | 34 | 8 | 42 | 56 | 4 | 60 | 0.003 | 0.248 | 0.0159 | 0.520.30–0.88 | MICA, MICB |
CNVR_4141_1 | 20 | 30,624,048 | 30,689,273 | 65,226 | Gain | 60 | 0 | 60 | 35 | 0 | 35 | 0.001 |  | 0.0006 | 2.651.52–4.61 | ENSECAG00000017324, ENSECAG00000002838 |
CNVR_4142_1 | 20 | 30,743,179 | 30,775,429 | 32,251 | Mixed | 14 | 18 | 32 | 11 | 5 | 16 | 0.422 | 0.008 | 0.0092 | 2.451.25–4.79 | ENSECAG00000019095 |
CNVR_4155_1 | 20 | 32,467,872 | 32,582,288 | 114,417 | Mixed | 3 | 10 | 13 | 7 | 19 | 26 | 0.231 | 0.086 | 0.0285 | 0.440.21–0.92 |  |
CNVR_4271_1 | 21 | 10,784,937 | 10,861,217 | 76,281 | Mixed | 8 | 1 | 9 | 3 | 0 | 3 | 0.077 | 0.987 | 0.0464 | 4.201.02–17.3 |  |
CNVR_4537 | 23 | 32,331,580 | 32,716,916 | 385,337 | Gain | 1 | 0 | 1 | 9 | 0 | 9 | 0.034 |  | 0.0342 | 0.110.01–0.85 | ENSECAG00000026512, ENSECAG00000009426 |
CNVR_4747d | 26 | 250,337 | 434,632 | 184,296 | Mixed | 1 | 8 | 9 | 8 | 8 | 16 | 0.048 | 0.966 | 0.0332 | 0.120.01–0.98 |  |
CNVR_4992_1d | 28 | 4428 | 376,070 | 371,643 | Mixed | 3 | 11 | 14 | 12 | 13 | 25 | 0.066 | 0.620 | 0.0092 | 0.210.05–0.83 | ENSECAG00000001173, ENSECAG00000003651 |