TY - JOUR AU - Flanagan, J. AU - Petronis, A. PY - 2005 DA - 2005// TI - Pharmacoepigenetics: from basic epigenetics to therapeutic applications JO - Drugs Pharm Sci VL - 156 UR - https://doi.org/10.1201/9780849359507.ch20 DO - 10.1201/9780849359507.ch20 ID - Flanagan2005 ER - TY - JOUR AU - Chaudhry, P. AU - Srinivasan, R. AU - Patel, F. D. PY - 2009 DA - 2009// TI - Utility of gene promoter methylation in prediction of response to platinum-based chemotherapy in epithelial ovarian cancer (EOC) JO - Cancer Investig VL - 27 UR - https://doi.org/10.1080/07357900902849699 DO - 10.1080/07357900902849699 ID - Chaudhry2009 ER - TY - JOUR AU - Shindo, T. AU - Shimizu, T. AU - Nishiyama, N. AU - Niinuma, T. AU - Kitajima, H. AU - Kai, M. AU - Shinkai, N. AU - Itoh, N. AU - Tanaka, T. AU - Suzuki, H. PY - 2017 DA - 2017// TI - Diagnosis and prediction of recurrent bladder cancer by urinary DNA methylation analysis: multicenter prospective study JO - Eur Urol Suppl VL - 16 UR - https://doi.org/10.1016/S1569-9056(17)30191-4 DO - 10.1016/S1569-9056(17)30191-4 ID - Shindo2017 ER - TY - JOUR AU - Heyn, H. AU - Esteller, M. PY - 2012 DA - 2012// TI - DNA methylation profiling in the clinic: applications and challenges JO - Nat Rev Genet VL - 13 UR - https://doi.org/10.1038/nrg3270 DO - 10.1038/nrg3270 ID - Heyn2012 ER - TY - JOUR AU - Bullinger, L. AU - Ehrich, M. AU - Döhner, K. AU - Schlenk, R. F. AU - Döhner, H. AU - Nelson, M. R. AU - van den Boom, D. PY - 2010 DA - 2010// TI - Quantitative DNA methylation predicts survival in adult acute myeloid leukemia JO - Blood VL - 115 UR - https://doi.org/10.1182/blood-2009-03-211003 DO - 10.1182/blood-2009-03-211003 ID - Bullinger2010 ER - TY - STD TI - Cole JH, Ritchie SJ, Bastin ME, Hernández MV, Maniega SM, Royle N, Corley J, Pattie A, Harris SE, Zhang Q, et al. Brain age predicts mortality. Mol Psychiatry. 2017:1–8. ID - ref6 ER - TY - JOUR AU - Howsmon, D. P. AU - Kruger, U. AU - Melnyk, S. AU - James, S. J. AU - Hahn, J. PY - 2017 DA - 2017// TI - Classification and adaptive behavior prediction of children with autism spectrum disorder based upon multivariate data analysis of markers of oxidative stress and DNA methylation JO - PLoS Comput Biol VL - 13 UR - https://doi.org/10.1371/journal.pcbi.1005385 DO - 10.1371/journal.pcbi.1005385 ID - Howsmon2017 ER - TY - JOUR AU - Liu, S. AU - Chen, X. AU - Chen, R. AU - Wang, J. AU - Zhu, G. AU - Jiang, J. AU - Wang, H. AU - Duan, S. AU - Huang, J. PY - 2017 DA - 2017// TI - Diagnostic role of Wnt pathway gene promoter methylation in non-small cell lung cancer JO - Oncotarget VL - 8 ID - Liu2017 ER - TY - JOUR AU - Peters, I. AU - Reese, C. AU - Dubrowinskaja, N. AU - Antonopoulos, W. I. AU - Krause, M. AU - Dang, T. N. AU - Grote, A. AU - Becker, A. AU - Hennenlotter, J. AU - Stenzl, A. PY - 2017 DA - 2017// TI - DNA methylation signature for the assessment of metastatic risk in primary renal cell cancer JO - J Clin Oncol VL - 35 UR - https://doi.org/10.1200/JCO.2017.35.6_suppl.516 DO - 10.1200/JCO.2017.35.6_suppl.516 ID - Peters2017 ER - TY - JOUR AU - Irvin, M. R. AU - Zhi, D. AU - Joehanes, R. AU - Mendelson, M. AU - Aslibekyan, S. AU - Claas, S. A. AU - Thibeault, K. S. AU - Patel, N. AU - Day, K. AU - Jones, L. W. AU - Liang, L. AU - Chen, B. H. AU - Yao, C. AU - Tiwari, H. K. AU - Ordovas, J. M. AU - Levy, D. AU - Absher, D. AU - Arnett, D. K. PY - 2014 DA - 2014// TI - Epigenome-Wide Association Study of Fasting Blood Lipids in the Genetics of Lipid-Lowering Drugs and Diet Network Study JO - Circulation VL - 130 UR - https://doi.org/10.1161/CIRCULATIONAHA.114.009158 DO - 10.1161/CIRCULATIONAHA.114.009158 ID - Irvin2014 ER - TY - JOUR AU - Dedeurwaerder, S. AU - Defrance, M. AU - Bizet, M. AU - Calonne, E. AU - Bontempi, G. AU - Fuks, F. PY - 2013 DA - 2013// TI - A comprehensive overview of Infinium HumanMethylation450 data processing JO - Brief Bioinform VL - 15 UR - https://doi.org/10.1093/bib/bbt054 DO - 10.1093/bib/bbt054 ID - Dedeurwaerder2013 ER - TY - JOUR AU - Price, A. L. AU - Patterson, N. J. AU - Plenge, R. M. AU - Weinblatt, M. E. AU - Shadick, N. A. AU - Reich, D. PY - 2006 DA - 2006// TI - Principal components analysis corrects for stratification in genome-wide association studies JO - Nat Genet VL - 38 UR - https://doi.org/10.1038/ng1847 DO - 10.1038/ng1847 ID - Price2006 ER - TY - JOUR AU - Balfour, J. A. AU - McTavish, D. AU - Heel, R. C. PY - 1990 DA - 1990// TI - Fenofibrate JO - Drugs VL - 40 UR - https://doi.org/10.2165/00003495-199040020-00007 DO - 10.2165/00003495-199040020-00007 ID - Balfour1990 ER - TY - JOUR AU - Wang, M. H. AU - Chang, B. AU - Sun, R. AU - Hu, I. AU - Xia, X. AU - Wu, W. K. AU - Chong, K. C. AU - Zee, B. C. PY - 2017 DA - 2017// TI - Stratified polygenic risk prediction model with application to CAGI bipolar disorder sequencing data JO - Hum Mutat VL - 38 UR - https://doi.org/10.1002/humu.23229 DO - 10.1002/humu.23229 ID - Wang2017 ER - TY - STD TI - Castejón-Limas M, Ordieres Meré J, Vergara EP, Martínez-de-Pisón FJ, Pernía AV, Alba F. The AMORE package: a MORE flexible neural network package. Published April. 1014:14. Available at https://cran.r-project.org/web/packages/AMORE/index.html UR - https://cran.r-project.org/web/packages/AMORE/index.html ID - ref15 ER - TY - JOUR AU - Cheng, B. AU - Titterington, D. M. PY - 1994 DA - 1994// TI - Neural networks: a review from a statistical perspective JO - Stat Sci VL - 9 UR - https://doi.org/10.1214/ss/1177010638 DO - 10.1214/ss/1177010638 ID - Cheng1994 ER - TY - STD TI - Hastie T, Tibshirani R, Friedman J: The elements of statistical learning: data mining, inference, and prediction. Springer New York 2017. Chapter: Neural Networks. ID - ref17 ER - TY - JOUR AU - Donaldson, R. G. AU - Kamstra, M. PY - 1999 DA - 1999// TI - Neural network forecast combining with interaction effects JO - J Frankl Inst VL - 336 UR - https://doi.org/10.1016/S0016-0032(98)00018-0 DO - 10.1016/S0016-0032(98)00018-0 ID - Donaldson1999 ER - TY - JOUR AU - Chen, M. H. AU - Yang, Q. PY - 2009 DA - 2009// TI - GWAF: an R package for genome-wide association analyses with family data JO - Bioinformatics VL - 26 UR - https://doi.org/10.1093/bioinformatics/btp710 DO - 10.1093/bioinformatics/btp710 ID - Chen2009 ER - TY - STD TI - Therneau TM, Therneau MT. Package “coxme”. Mixed effects cox models. R package version. 2015:2. Available at https://cran.r-project.org/web/packages/coxme/coxme.pdf UR - https://cran.r-project.org/web/packages/coxme/coxme.pdf ID - ref20 ER - TY - STD TI - Zheng X, Zheng MX. Package ‘SNPRelate’. 2013. Available at ftp://gnu.cs.pu.edu.tw/network/CRAN/web/packages/SNPRelate/SNPRelate.pdf UR - ftp://gnu.cs.pu.edu.tw/network/CRAN/web/packages/SNPRelate/SNPRelate.pdf ID - ref21 ER - TY - JOUR AU - Zheng, X. AU - Levine, D. AU - Shen, J. AU - Gogarten, S. M. AU - Laurie, C. AU - Weir, B. S. PY - 2012 DA - 2012// TI - A high-performance computing toolset for relatedness and principal component analysis of SNP data JO - Bioinformatics VL - 28 UR - https://doi.org/10.1093/bioinformatics/bts606 DO - 10.1093/bioinformatics/bts606 ID - Zheng2012 ER - TY - JOUR AU - Yen, C. L. AU - Stone, S. J. AU - Koliwad, S. AU - Harris, C. AU - Farese, R. V. PY - 2008 DA - 2008// TI - Thematic review series: glycerolipids. DGAT enzymes and triacylglycerol biosynthesis JO - J Lipid Res VL - 49 UR - https://doi.org/10.1194/jlr.R800018-JLR200 DO - 10.1194/jlr.R800018-JLR200 ID - Yen2008 ER - TY - JOUR AU - Yoganathan, P. AU - Karunakaran, S. AU - Ho, M. M. AU - Clee, S. M. PY - 2012 DA - 2012// TI - Nutritional regulation of genome-wide association obesity genes in a tissue-dependent manner JO - Nutr Metab (Lond) VL - 9 UR - https://doi.org/10.1186/1743-7075-9-65 DO - 10.1186/1743-7075-9-65 ID - Yoganathan2012 ER - TY - JOUR AU - Liu, Y. o. n. g. -. J. u. n. AU - Liu, X. i. a. o. -. G. a. n. g. AU - Wang, L. i. a. n. g. AU - Dina, C. h. r. i. s. t. i. a. n. AU - Yan, H. a. n. AU - Liu, J. i. a. n. -. F. e. n. g. AU - Levy, S. h. a. w. n. AU - Papasian, C. h. r. i. s. t. o. p. h. e. r. J. AU - Drees, B. e. t. t. y. M. AU - Hamilton, J. a. m. e. s. J. AU - Meyre, D. a. v. i. d. AU - Delplanque, J. e. r. o. m. e. AU - Pei, Y. u. -. F. a. n. g. AU - Zhang, L. e. i. AU - Recker, R. o. b. e. r. t. R. AU - Froguel, P. h. i. l. i. p. p. e. AU - Deng, H. o. n. g. -. W. e. n. PY - 2008 DA - 2008// TI - Genome-wide association scans identified CTNNBL1 as a novel gene for obesity JO - Human Molecular Genetics VL - 17 UR - https://doi.org/10.1093/hmg/ddn072 DO - 10.1093/hmg/ddn072 ID - Liu2008 ER - TY - JOUR AU - Vasiliou, V. AU - Nebert, D. W. PY - 2005 DA - 2005// TI - Analysis and update of the human aldehyde dehydrogenase (ALDH) gene family JO - Hum Genomics VL - 2 ID - Vasiliou2005 ER - TY - JOUR AU - Deng, S. -. P. AU - Lin, D. AU - Calhoun, V. D. AU - Wang, Y. -. P. PY - 2016 DA - 2016// TI - Predicting schizophrenia by fusing networks from SNPs, DNA methylation and fMRI data JO - Conf Proc IEEE Eng Med Biol Soc VL - 2016 ID - Deng2016 ER -