Genetics of resistance to photobacteriosis in gilthead sea bream (Sparus aurata) using 2b-RAD sequencing

BMC Genomic Data

Table 4 Variances explained by genome-wide significantly associated SNPs

SA	Locus ID	Pos	Allele1	Allele2	MAF	α	SE	P-value	%varG	%varP
17	248936_32	44.729	G	T	0.278	−0.163	0.026	6.69e-10	13.281	4.406
17	24643_19	49.430	A	G	0.467	−0.139	0.023	2.55e-09	11.922	3.955
17	283885_36	44.372	G	C	0.343	−0.140	0.024	3.03e-09	10.929	3.626
17	81173_9	40.766	A	G	0.362	−0.132	0.024	3.74e-08	9.892	3.282
17	211563_28	53.066	A	G	0.353	−0.143	0.026	4.61e-08	11.512	3.819
17	265801_18	37.385	T	C	0.321	−0.132	0.025	1.78e-07	9.457	3.137
17	95842_16	51.835	G	C	0.425	0.116	0.023	5.53e-07	8.113	2.692
17	225775_29	40.582	T	C	0.367	0.122	0.025	9.84e-07	8.570	2.843
17	213907_2	50.873	C	G	0.348	0.114	0.024	2.01e-06	7.278	2.414
17	3001_36	48.242	A	G	0.238	−0.134	0.028	2.09e-06	8.018	2.660
17	53157_6	44.333	T	C	0.179	−0.151	0.032	2.18e-06	8.226	2.729

SA linkage group number for gilthead sea bream (Sparus aurata, SA), Pos (cM) genetic map position of SNP, A1 & A2 minor & major alleles, respectively, MAF minor allele frequency, α Allele substitution effect, SE standard error, P aignificance value, varG proportion of genotypic variance explained, varP proportion of phenotypic variance explained

ISSN: 2730-6844