TY - JOUR AU - Mieszkowska, N. AU - Genner, M. J. AU - Hawkins, S. J. AU - Sims, D. W. PY - 2009 DA - 2009// TI - Effects of climate change and commercial fishing on Atlantic cod Gadus morhua JO - Adv Mar Biol VL - 56 UR - https://doi.org/10.1016/S0065-2881(09)56003-8 DO - 10.1016/S0065-2881(09)56003-8 ID - Mieszkowska2009 ER - TY - JOUR AU - Myers, R. A. AU - Hutchings, J. A. AU - Barrowman, N. J. PY - 1997 DA - 1997// TI - Why do fish sotcks collapse? The example of cod in Atlantic Canada JO - Ecol Appl VL - 7 UR - https://doi.org/10.1890/1051-0761(1997)007[0091:WDFSCT]2.0.CO;2 DO - 10.1890/1051-0761(1997)007[0091:WDFSCT]2.0.CO;2 ID - Myers1997 ER - TY - JOUR AU - Hutchings, J. A. PY - 1809 DA - 1809// TI - Thresholds for impaired species recovery JO - Proc R Soc B Biol Sci VL - 282 ID - Hutchings1809 ER - TY - JOUR AU - Olsen, E. M. AU - Knutsen, H. AU - Gjøsæter, J. AU - Jorde, P. E. AU - Knutsen, J. A. AU - Stenseth, N. C. PY - 2004 DA - 2004// TI - Life-history variation among local populations of Atlantic cod from the Norwegian Skagerrak coast JO - J Fish Biol VL - 64 UR - https://doi.org/10.1111/j.0022-1112.2004.00402.x DO - 10.1111/j.0022-1112.2004.00402.x ID - Olsen2004 ER - TY - JOUR AU - Imsland, A. K. AU - Jónsdóttir, Ó. D. B. PY - 2003 DA - 2003// TI - Linking population genetics and growth properties of Atlantic cod JO - Rev Fish Biol Fish VL - 13 UR - https://doi.org/10.1023/A:1026373509576 DO - 10.1023/A:1026373509576 ID - Imsland2003 ER - TY - JOUR AU - Nordeide, J. T. AU - Johansen, S. D. AU - Jørgensen, T. E. AU - Karlsen, B. O. AU - Moum, T. PY - 2011 DA - 2011// TI - Population connectivity among migratory and stationary cod Gadus morhua in the Northeast Atlantic—a review of 80 years of study JO - Mar Ecol Prog Ser VL - 435 UR - https://doi.org/10.3354/meps09232 DO - 10.3354/meps09232 ID - Nordeide2011 ER - TY - JOUR AU - O’Leary, D. B. AU - Coughlan, J. AU - Dillane, E. AU - McCarthy, T. V. AU - Cross, T. F. PY - 2007 DA - 2007// TI - Microsatellite variation in cod Gadus morhua throughout its geographic range JO - J Fish Biol VL - 70 UR - https://doi.org/10.1111/j.1095-8649.2007.01451.x DO - 10.1111/j.1095-8649.2007.01451.x ID - O’Leary2007 ER - TY - JOUR AU - Frydenberg, O. V. E. AU - MøLler, D. A. G. AU - NæVdal, G. AU - Sick, K. PY - 1965 DA - 1965// TI - Haemoglobin polymorphism in Norwegian cod populations JO - Hereditas VL - 53 ID - Frydenberg1965 ER - TY - JOUR AU - Møller, D. PY - 1968 DA - 1968// TI - Genetic diversities in spawning cod along the Norwegian coast JO - Hereditas VL - 60 UR - https://doi.org/10.1111/j.1601-5223.1968.tb02193.x DO - 10.1111/j.1601-5223.1968.tb02193.x ID - Møller1968 ER - TY - STD TI - Sick K. Haemoglobin polymorphism of cod in the Baltic and the Danish Belt Sea. Hereditas. 1965;54 ID - ref10 ER - TY - JOUR AU - Sick, K. PY - 1965 DA - 1965// TI - Haemoglobin polymorphism of cod in the North Sea and the North Atlantic Ocean JO - Hereditas VL - 54 UR - https://doi.org/10.1111/j.1601-5223.1965.tb02005.x DO - 10.1111/j.1601-5223.1965.tb02005.x ID - Sick1965 ER - TY - STD TI - Møller D. Genetic differences between cod groups in the Lofoten area. Nature. 1966;212 ID - ref12 ER - TY - CHAP AU - Jørstad, K. E. AU - Dahl, E. AU - Danielssen, D. S. AU - Moksness, E. AU - Solemdal, P. PY - 1984 DA - 1984// TI - Genetic analysis of cod in northern Norway BT - The Propagation of Cod (Gadus morhua L ). Vol. 1. Arendal ID - Jørstad1984 ER - TY - JOUR AU - Jørstad, K. E. AU - Nævdal, G. PY - 1989 DA - 1989// TI - Genetic variation and population structure of cod, Gadus morhua L., in some fjords in northern Norway JO - J Fish Biol VL - 35 UR - https://doi.org/10.1111/j.1095-8649.1989.tb03067.x DO - 10.1111/j.1095-8649.1989.tb03067.x ID - Jørstad1989 ER - TY - JOUR AU - Mork, J. AU - Ryman, N. AU - Ståhl, G. AU - Utter, F. AU - Sundnes, G. PY - 1985 DA - 1985// TI - Genetic variation in Atlantic cod (Gadus morhua) throughout its range JO - Can J Fish Aquat Sci VL - 42 UR - https://doi.org/10.1139/f85-198 DO - 10.1139/f85-198 ID - Mork1985 ER - TY - JOUR AU - Árnason, E. AU - Pálsson, S. AU - Arason, A. PY - 1992 DA - 1992// TI - Gene flow and lack of population differentiation in Atlantic cod, Gadus morhua L., from Iceland, and comparison of cod from Norway and Newfoundland JO - J Fish Biol VL - 40 UR - https://doi.org/10.1111/j.1095-8649.1992.tb02622.x DO - 10.1111/j.1095-8649.1992.tb02622.x ID - Árnason1992 ER - TY - JOUR AU - Dahle, G. PY - 1991 DA - 1991// TI - Cod, Gadus morhua L., populations identified by mitochondrial DNA JO - J Fish Biol VL - 38 UR - https://doi.org/10.1111/j.1095-8649.1991.tb03115.x DO - 10.1111/j.1095-8649.1991.tb03115.x ID - Dahle1991 ER - TY - JOUR AU - Fevolden, S. E. AU - Pogson, G. H. PY - 1997 DA - 1997// TI - Genetic divergence at the synaptophysin (SypI) locus among Norwegian coastal and north-East Arctic populations of Atlantic cod JO - J Fish Biol VL - 51 ID - Fevolden1997 ER - TY - JOUR AU - Sarvas, T. H. AU - Fevolden, S. -. E. PY - 2005 DA - 2005// TI - The scnDNA locus Pan I reveals concurrent presence of different populations of Atlantic cod (Gadus morhua L.) within a single fjord JO - Fish Res VL - 76 UR - https://doi.org/10.1016/j.fishres.2005.07.013 DO - 10.1016/j.fishres.2005.07.013 ID - Sarvas2005 ER - TY - JOUR AU - Sarvas, T. H. AU - Fevolden, S. E. PY - 2005 DA - 2005// TI - Pantophysin (Pan I) locus divergence between inshore v. Offshore and northern v. Southern populations of Atlantic cod in the north-East Atlantic JO - J Fish Biol VL - 67 UR - https://doi.org/10.1111/j.0022-1112.2005.00738.x DO - 10.1111/j.0022-1112.2005.00738.x ID - Sarvas2005 ER - TY - JOUR AU - Pogson, G. H. AU - Fevolden, S. -. E. PY - 2003 DA - 2003// TI - Natural selection and the genetic differentiation of coastal and Arctic populations of the Atlantic cod in northern Norway: a test involving nucleotide sequence variation at the pantophysin (PanI) locus JO - Mol Ecol VL - 12 UR - https://doi.org/10.1046/j.1365-294X.2003.01713.x DO - 10.1046/j.1365-294X.2003.01713.x ID - Pogson2003 ER - TY - JOUR AU - Fevolden, S. E. AU - Westgaard, J. I. AU - Pedersen, T. AU - Præbel, K. PY - 2012 DA - 2012// TI - Settling-depth vs. genotype and size vs. genotype correlations at the Pan I locus in 0-group Atlantic cod Gadus morhua JO - Mar Ecol Prog Ser VL - 468 UR - https://doi.org/10.3354/meps09990 DO - 10.3354/meps09990 ID - Fevolden2012 ER - TY - JOUR AU - Heath, M. R. AU - Culling, M. A. AU - Crozier, W. W. AU - Fox, C. J. AU - Gurney, W. S. C. AU - Hutchinson, W. F. AU - Nielsen, E. E. AU - O'Sullivan, M. AU - Preedy, K. F. AU - Righton, D. A. PY - 2014 DA - 2014// TI - Combination of genetics and spatial modelling highlights the sensitivity of cod (Gadus morhua) population diversity in the North Sea to distributions of fishing JO - ICES J Mar Sci VL - 71 UR - https://doi.org/10.1093/icesjms/fst185 DO - 10.1093/icesjms/fst185 ID - Heath2014 ER - TY - JOUR AU - Knutsen, H. AU - Jorde, P. E. AU - André, C. AU - Stenseth, N. C. PY - 2003 DA - 2003// TI - Fine-scaled geographic population structuring in a highly mobile marine species: the Atlantic cod JO - Mol Ecol VL - 12 UR - https://doi.org/10.1046/j.1365-294X.2003.01750.x DO - 10.1046/j.1365-294X.2003.01750.x ID - Knutsen2003 ER - TY - JOUR AU - Nielsen, E. E. AU - Hansen, M. M. AU - Schmidt, C. AU - Meldrup, D. AU - Gronkjaer, P. PY - 2001 DA - 2001// TI - Fisheries: population of origin of Atlantic cod JO - Nature VL - 413 UR - https://doi.org/10.1038/35095112 DO - 10.1038/35095112 ID - Nielsen2001 ER - TY - JOUR AU - Skarstein, T. H. AU - Westgaard, J. I. AU - Fevolden, S. E. PY - 2007 DA - 2007// TI - Comparing microsatellite variation in north-East Atlantic cod (Gadus morhua L.) to genetic structuring as revealed by the pantophysin (Pan I) locus JO - J Fish Biol VL - 70 UR - https://doi.org/10.1111/j.1095-8649.2007.01456.x DO - 10.1111/j.1095-8649.2007.01456.x ID - Skarstein2007 ER - TY - CHAP AU - Wennevik, V. AU - Jørstad, K. E. AU - Dahle, G. AU - Fevolden, S. -. E. ED - Davenport, J. ED - Burnell, G. M. ED - Cross, T. ED - Emmerson, M. ED - Mcallen, R. ED - Ramsay, R. ED - Dordrecht, R. E. PY - 2008 DA - 2008// TI - Mixed stock analysis and the power of different classes of molecular markers in discriminating coastal and oceanic Atlantic cod (Gadus morhua L.) on the Lofoten spawning grounds, Northern Norway BT - Challenges to Marine Ecosystems: Proceedings of the 41st European Marine Biology Symposium PB - Springer CY - Netherlands UR - https://doi.org/10.1007/978-1-4020-8808-7_1 DO - 10.1007/978-1-4020-8808-7_1 ID - Wennevik2008 ER - TY - JOUR AU - Westgaard, J. -. I. AU - Fevolden, S. -. E. PY - 2007 DA - 2007// TI - Atlantic cod (Gadus morhua L.) in inner and outer coastal zones of northern Norway display divergent genetic signature at non-neutral loci JO - Fish Res VL - 85 UR - https://doi.org/10.1016/j.fishres.2007.04.001 DO - 10.1016/j.fishres.2007.04.001 ID - Westgaard2007 ER - TY - JOUR AU - Berg, P. R. AU - Star, B. AU - Pampoulie, C. AU - Sodeland, M. AU - Barth, J. M. I. AU - Knutsen, H. AU - Jakobsen, K. S. AU - Jentoft, S. PY - 2016 DA - 2016// TI - Three chromosomal rearrangements promote genomic divergence between migratory and stationary ecotypes of Atlantic cod JO - Sci Rep VL - 6 UR - https://doi.org/10.1038/srep23246 DO - 10.1038/srep23246 ID - Berg2016 ER - TY - JOUR AU - Bradbury, I. R. AU - Hubert, S. AU - Higgins, B. AU - Borza, T. AU - Bowman, S. AU - Paterson, I. G. AU - Snelgrove, P. V. R. AU - Morris, C. J. AU - Gregory, R. S. AU - Hardie, D. C. PY - 2010 DA - 2010// TI - Parallel adaptive evolution of Atlantic cod on both sides of the Atlantic Ocean in response to temperature JO - Proc R Soc B Biol Sci VL - 277 UR - https://doi.org/10.1098/rspb.2010.0985 DO - 10.1098/rspb.2010.0985 ID - Bradbury2010 ER - TY - JOUR AU - Hemmer-Hansen, J. AU - Nielsen, E. E. AU - Therkildsen, N. O. AU - Taylor, M. I. AU - Ogden, R. AU - Geffen, A. J. AU - Bekkevold, D. AU - Helyar, S. AU - Pampoulie, C. AU - Johansen, T. PY - 2013 DA - 2013// TI - A genomic island linked to ecotype divergence in Atlantic cod JO - Mol Ecol VL - 22 UR - https://doi.org/10.1111/mec.12284 DO - 10.1111/mec.12284 ID - Hemmer-Hansen2013 ER - TY - JOUR AU - Kirubakaran, T. G. AU - Grove, H. AU - Kent, M. P. AU - Sandve, S. R. AU - Baranski, M. AU - Nome, T. AU - De Rosa, M. C. AU - Righino, B. AU - Johansen, T. AU - Otterå, H. PY - 2016 DA - 2016// TI - Two adjacent inversions maintain genomic differentiation between migratory and stationary ecotypes of Atlantic cod JO - Mol Ecol VL - 25 UR - https://doi.org/10.1111/mec.13592 DO - 10.1111/mec.13592 ID - Kirubakaran2016 ER - TY - STD TI - Moen T, Hayes B, Nilsen F, Delghandi M, Fjalestad KT, Fevolden SE, Berg PR, Lien S. Identification and characterisation of novel SNP markers in Atlantic cod: evidence for directional selection. BMC Genet. 2008;9 ID - ref33 ER - TY - JOUR AU - Therkildsen, N. O. AU - Hemmer-Hansen, J. AU - Als, T. D. AU - Swain, D. P. AU - Morgan, M. J. AU - Trippel, E. A. AU - Palumbi, S. R. AU - Meldrup, D. AU - Nielsen, E. E. PY - 2013 DA - 2013// TI - Microevolution in time and space: SNP analysis of historical DNA reveals dynamic signatures of selection in Atlantic cod JO - Mol Ecol VL - 22 UR - https://doi.org/10.1111/mec.12260 DO - 10.1111/mec.12260 ID - Therkildsen2013 ER - TY - CHAP AU - Halldórsdóttir, K. AU - Árnason, E. PY - 2015 DA - 2015// TI - Whole-genome sequencing uncovers cryptic and hybrid species among Atlantic and Pacific cod-fish BT - bioRxiv ID - Halldórsdóttir2015 ER - TY - JOUR AU - Karlsen, B. O. AU - Klingan, K. AU - Emblem, Å. AU - Jørgensen, T. E. AU - Jueterbock, A. AU - Furmanek, T. AU - Hoarau, G. AU - Johansen, S. D. AU - Nordeide, J. T. AU - Moum, T. PY - 2013 DA - 2013// TI - Genomic divergence between the migratory and stationary ecotypes of Atlantic cod JO - Mol Ecol VL - 22 UR - https://doi.org/10.1111/mec.12454 DO - 10.1111/mec.12454 ID - Karlsen2013 ER - TY - JOUR AU - Árnason, E. AU - Pálsson, S. PY - 1996 DA - 1996// TI - Mitochondrial cytochrome b DNA sequence variation of Atlantic cod Gadus morhua, from Norway JO - Mol Ecol VL - 5 UR - https://doi.org/10.1111/j.1365-294X.1996.tb00368.x DO - 10.1111/j.1365-294X.1996.tb00368.x ID - Árnason1996 ER - TY - JOUR AU - Bradbury, I. R. AU - Hubert, S. AU - Higgins, B. AU - Bowman, S. AU - Borza, T. AU - Paterson, I. G. AU - Snelgrove, P. V. R. AU - Morris, C. J. AU - Gregory, R. S. AU - Hardie, D. PY - 2013 DA - 2013// TI - Genomic islands of divergence and their consequences for the resolution of spatial structure in an exploited marine fish JO - Evol Appl VL - 6 UR - https://doi.org/10.1111/eva.12026 DO - 10.1111/eva.12026 ID - Bradbury2013 ER - TY - JOUR AU - Ruzzante, D. E. AU - Wroblewski, J. S. AU - Taggart, C. T. AU - Smedbol, R. K. AU - Cook, D. AU - Goddaard, S. V. PY - 2000 DA - 2000// TI - Bay-scale population structure in coastal Atlantic cod in Labrador and Newfoundland, Canada JO - J Fish Biol VL - 56 UR - https://doi.org/10.1111/j.1095-8649.2000.tb02116.x DO - 10.1111/j.1095-8649.2000.tb02116.x ID - Ruzzante2000 ER - TY - JOUR AU - Kovach, A. I. AU - Breton, T. S. AU - Berlinsky, D. L. AU - Maceda, L. AU - Wirgin, I. PY - 2010 DA - 2010// TI - Fine-scale spatial and temporal genetic structure of Atlantic cod off the Atlantic coast of the USA JO - Mar Ecol Prog Ser VL - 410 UR - https://doi.org/10.3354/meps08612 DO - 10.3354/meps08612 ID - Kovach2010 ER - TY - JOUR AU - Bonanomi, S. AU - Overgaard Therkildsen, N. AU - Retzel, A. AU - Berg Hedeholm, R. AU - Pedersen, M. W. AU - Meldrup, D. AU - Pampoulie, C. AU - Hemmer-Hansen, J. AU - Grønkjær, P. AU - Nielsen, E. E. PY - 2016 DA - 2016// TI - Historical DNA documents long-distance natal homing in marine fish JO - Mol Ecol VL - 25 UR - https://doi.org/10.1111/mec.13580 DO - 10.1111/mec.13580 ID - Bonanomi2016 ER - TY - JOUR AU - Therkildsen, N. O. AU - Hemmer-Hansen, J. AU - Hedeholm, R. B. AU - Wisz, M. S. AU - Pampoulie, C. AU - Meldrup, D. AU - Bonanomi, S. AU - Retzel, A. AU - Olsen, S. M. AU - Nielsen, E. E. PY - 2013 DA - 2013// TI - Spatiotemporal SNP analysis reveals pronounced biocomplexity at the northern range margin of Atlantic cod Gadus morhua JO - Evol Appl VL - 6 UR - https://doi.org/10.1111/eva.12055 DO - 10.1111/eva.12055 ID - Therkildsen2013 ER - TY - JOUR AU - Pampoulie, C. AU - Ruzzante, D. E. AU - Chosson, V. AU - Jörundsdóttir, T. D. AU - Taylor, L. AU - Thorsteinsson, V. AU - Daníelsdóttir, A. K. AU - Marteinsdóttir, G. PY - 2006 DA - 2006// TI - The genetic structure of Atlantic cod (Gadus morhua) around Iceland: insight from microsatellites, the Pan I locus, and tagging experiments JO - Canadian Journal of Fisheries and Aquatic Sciences VL - 63 UR - https://doi.org/10.1139/f06-150 DO - 10.1139/f06-150 ID - Pampoulie2006 ER - TY - STD TI - Nielsen EE, Hemmer-Hansen J, Larsen PF, Bekkevold D. Population genomics of marine fishes: identifying adaptive variation in space and time. Mol Ecol. 2009;18 ID - ref44 ER - TY - JOUR AU - Sodeland, M. AU - Jorde, P. E. AU - Lien, S. AU - Jentoft, S. AU - Berg, P. R. AU - Grove, H. AU - Kent, M. P. AU - Arnyasi, M. AU - Olsen, E. M. AU - Knutsen, H. PY - 2016 DA - 2016// TI - “Islands of divergence” in the Atlantic cod genome represent polymorphic chromosomal rearrangements JO - Genome Biol Evol VL - 8 UR - https://doi.org/10.1093/gbe/evw057 DO - 10.1093/gbe/evw057 ID - Sodeland2016 ER - TY - JOUR AU - Pampoulie, C. AU - Daníelsdóttir, A. K. AU - Thorsteinsson, V. AU - Hjörleifsson, E. AU - Marteinsdóttir, G. AU - Ruzzante, D. E. PY - 2012 DA - 2012// TI - The composition of adult overwintering and juvenile aggregations of Atlantic cod (Gadus morhua) around Iceland using neutral and functional markers: a statistical challenge JO - Can J Fish Aquat Sci VL - 69 UR - https://doi.org/10.1139/f2011-151 DO - 10.1139/f2011-151 ID - Pampoulie2012 ER - TY - JOUR AU - Ruzzante, D. E. AU - Taggart, C. T. AU - Cook, D. PY - 1999 DA - 1999// TI - A review of the evidence for genetic structure of cod (Gadus morhua) populations in the NW Atlantic and population affinities of larval cod off Newfoundland and the Gulf of St. Lawrence JO - Fisheries Research VL - 43 UR - https://doi.org/10.1016/S0165-7836(99)00067-3 DO - 10.1016/S0165-7836(99)00067-3 ID - Ruzzante1999 ER - TY - JOUR AU - Hubert, S. AU - Higgins, B. AU - Borza, T. AU - Bowman, S. PY - 2010 DA - 2010// TI - Development of a SNP resource and a genetic linkage map for Atlantic cod (Gadus morhua) JO - BMC Genomics VL - 11 UR - https://doi.org/10.1186/1471-2164-11-191 DO - 10.1186/1471-2164-11-191 ID - Hubert2010 ER - TY - JOUR AU - Berg, P. R. AU - Jentoft, S. AU - Star, B. AU - Ring, K. H. AU - Knutsen, H. AU - Lien, S. AU - Jakobsen, K. S. AU - André, C. PY - 2015 DA - 2015// TI - Adaptation to low salinity promotes genomic divergence in Atlantic cod (Gadus morhua L.) JO - Genome Biol Evol VL - 7 UR - https://doi.org/10.1093/gbe/evv093 DO - 10.1093/gbe/evv093 ID - Berg2015 ER - TY - CHAP PY - 2015 DA - 2015// TI - Cod (Gadus morhua) in subareas I and II (Northeast Arctic) BT - ICES Advice. Vol. book 3 ID - ref50 ER - TY - STD TI - ICES. Report of the Arctic fisheries working group (AFWG). In: ICES CM 2015/ACOM:05. Hamburg-Germany; 2015. ID - ref51 ER - TY - CHAP PY - 2015 DA - 2015// TI - Cod (Gadus morhua) in Subareas I and II (Norwegian coastal waters cod) BT - ICES Advice ID - ref52 ER - TY - JOUR AU - Dahle, G. AU - Jørstad, K. E. AU - Rusaas, H. E. AU - Otterå, H. PY - 2006 DA - 2006// TI - Genetic characterisation of broodstock collected from four Norwegian coastal cod (Gadus morhua) populations JO - ICES J Mar Sci VL - 63 UR - https://doi.org/10.1016/j.icesjms.2005.10.015 DO - 10.1016/j.icesjms.2005.10.015 ID - Dahle2006 ER - TY - JOUR AU - Jørstad, K. E. AU - Van Der Meeren, T. AU - Dahle, G. AU - Gnalt, A. L. A. AU - Taggart, J. B. AU - Glover, K. AU - Otterå, H. PY - 2007 DA - 2007// TI - Offspring performance of three different cod populations, measured under identical environmental conditions JO - Aquaculture VL - 272 UR - https://doi.org/10.1016/j.aquaculture.2007.07.098 DO - 10.1016/j.aquaculture.2007.07.098 ID - Jørstad2007 ER - TY - JOUR AU - Otterå, H. AU - Agnalt, A. -. L. AU - Jørstad, K. E. PY - 2006 DA - 2006// TI - Differences in spawning time of captive Atlantic cod from four regions of Norway, kept under identical conditions JO - ICES J Marine Science VL - 63 UR - https://doi.org/10.1016/j.icesjms.2005.11.004 DO - 10.1016/j.icesjms.2005.11.004 ID - Otterå2006 ER - TY - JOUR AU - Dahle, G. AU - Johansen, T. AU - Westgaard, J. -. I. AU - Aglen, A. AU - Glover, K. A. PY - 2018 DA - 2018// TI - Genetic management of mixed-stock fisheries “real-time”: The case of the largest remaining cod fishery operating in Atlantica in 2007–2017 JO - Fish Res VL - 205 UR - https://doi.org/10.1016/j.fishres.2018.04.006 DO - 10.1016/j.fishres.2018.04.006 ID - Dahle2018 ER - TY - STD TI - Johansen T, Westgaard J-I, Seliussen BB, Nedreaas K, Dahle G, Glover KA, Kvalsund R, Aglen A. Handling editor: Stewart G: “real-time” genetic monitoring of a commercial fishery on the doorstep of an MPA reveals unique insights into the interaction between coastal and migratory forms of the Atlantic cod. ICES J Mar Sci. 2017; https://doi.org/10.1093/icesjms/fsx224. ID - ref57 ER - TY - CHAP AU - Rollefsen, G. PY - 1933 DA - 1933// TI - The otoliths of cod BT - Fiskeridirektoratets skrifter, serie Havundersokelser ID - Rollefsen1933 ER - TY - JOUR AU - Berg, E. AU - Albert, O. T. PY - 2003 DA - 2003// TI - Cod in fjords and coastal waters of North Norway: distribution and variation in length and maturity at age JO - ICES J Mar Sci VL - 60 UR - https://doi.org/10.1016/S1054-3139(03)00037-7 DO - 10.1016/S1054-3139(03)00037-7 ID - Berg2003 ER - TY - JOUR AU - Brooker, A. L. AU - Cook, D. AU - Bentzen, P. AU - Wright, J. M. AU - Doyle, R. W. PY - 1994 DA - 1994// TI - Organization of microsatellites differs between mammals and cold-water teleost fishes JO - Can J Fish Aquat Sci VL - 51 UR - https://doi.org/10.1139/f94-198 DO - 10.1139/f94-198 ID - Brooker1994 ER - TY - JOUR AU - Miller, K. M. AU - Le, K. D. AU - Beacham, T. D. PY - 2000 DA - 2000// TI - Development of tri- and tetranucleotide repeat microsatellite loci in Atlantic cod (Gadus morhua) JO - Mol Ecol VL - 9 UR - https://doi.org/10.1046/j.1365-294x.2000.00804-2.x DO - 10.1046/j.1365-294x.2000.00804-2.x ID - Miller2000 ER - TY - JOUR AU - O'Reilly, P. T. AU - Canino, M. F. AU - Bailey, K. M. AU - Bentzen, P. PY - 2000 DA - 2000// TI - Isolation of twenty low stutter di- and tetranucleotide microsatellites for population analyses of walleye Pollock and other gadoids JO - J Fish Biol VL - 56 UR - https://doi.org/10.1111/j.1095-8649.2000.tb02124.x DO - 10.1111/j.1095-8649.2000.tb02124.x ID - O'Reilly2000 ER - TY - JOUR AU - Stenvik, J. AU - Wesmajervi, M. S. AU - Fjalestad, K. T. AU - Damsgård, B. AU - Delghandi, M. PY - 2006 DA - 2006// TI - Development of 25 gene-associated microsatellite markers of Atlantic cod (Gadus morhua L.) JO - Mol Ecol Notes VL - 6 UR - https://doi.org/10.1111/j.1471-8286.2006.01450.x DO - 10.1111/j.1471-8286.2006.01450.x ID - Stenvik2006 ER - TY - JOUR AU - Wesmajervi, M. S. AU - Tafese, T. AU - Stenvik, J. AU - Fjalestad, K. T. AU - Damsgård, B. AU - Delghandi, M. PY - 2007 DA - 2007// TI - Eight new microsatellite markers in Atlantic cod (Gadus morhua L.) derived from an enriched genomic library JO - Mol Ecol Notes VL - 7 UR - https://doi.org/10.1111/j.1471-8286.2006.01555.x DO - 10.1111/j.1471-8286.2006.01555.x ID - Wesmajervi2007 ER - TY - JOUR AU - Dieringer, D. AU - Schlötterer, C. PY - 2003 DA - 2003// TI - MICROSATELLITE ANALYSER (MSA): a platform independent analysis tool for large microsatellite data sets JO - Mol Ecol Notes VL - 3 UR - https://doi.org/10.1046/j.1471-8286.2003.00351.x DO - 10.1046/j.1471-8286.2003.00351.x ID - Dieringer2003 ER - TY - JOUR AU - Peakall, R. AU - Smouse, P. E. PY - 2006 DA - 2006// TI - GenAlEx 6: genetic analysis in excel. Population genetic software for teaching and research JO - Mol Ecol Notes VL - 6 UR - https://doi.org/10.1111/j.1471-8286.2005.01155.x DO - 10.1111/j.1471-8286.2005.01155.x ID - Peakall2006 ER - TY - JOUR AU - Rousset, F. PY - 2008 DA - 2008// TI - GENEPOP'007: a complete re-implementation of the genepop software for windows and Linux JO - Mol Ecol Resour VL - 8 UR - https://doi.org/10.1111/j.1471-8286.2007.01931.x DO - 10.1111/j.1471-8286.2007.01931.x ID - Rousset2008 ER - TY - JOUR AU - Waples, R. S. AU - Do, C. H. I. PY - 2008 DA - 2008// TI - LDNE: a program for estimating effective population size from data on linkage disequilibrium JO - Mol Ecol Resour VL - 8 UR - https://doi.org/10.1111/j.1755-0998.2007.02061.x DO - 10.1111/j.1755-0998.2007.02061.x ID - Waples2008 ER - TY - JOUR AU - Holm, S. PY - 1979 DA - 1979// TI - A simple sequentially rejective multiple test procedure JO - Scand J Stat VL - 6 ID - Holm1979 ER - TY - JOUR AU - Antao, T. AU - Lopes, A. AU - Lopes, R. J. AU - Beja-Pereira, A. AU - Luikart, G. PY - 2008 DA - 2008// TI - LOSITAN: a workbench to detect molecular adaptation based on a FST-outlier method JO - BMC Bioinformatics VL - 9 UR - https://doi.org/10.1186/1471-2105-9-323 DO - 10.1186/1471-2105-9-323 ID - Antao2008 ER - TY - JOUR AU - Excoffier, L. AU - Laval, G. AU - Schneider, S. PY - 2005 DA - 2005// TI - Arlequin ver. 3.0: an integrated software package for population genetics data analysis JO - Evol Bioinformatics Online VL - 1 ID - Excoffier2005 ER - TY - BOOK AU - Kendall, M. AU - Gibbons, J. D. PY - 1976 DA - 1976// TI - Rank correlation methods ID - Kendall1976 ER - TY - JOUR AU - Valz, P. D. AU - Thompson, M. E. PY - 1994 DA - 1994// TI - Exact inference for Kendall's s and Spearman's rho JO - J Comput Graph Stat VL - 3 ID - Valz1994 ER - TY - BOOK PY - 2016 DA - 2016// TI - A language and environment for statistical Computing PB - R Foundation for Statistical Computing CY - Viena, Austrial ID - ref74 ER - TY - JOUR AU - Manni, F. AU - Guérard, E. AU - Heyer, E. PY - 2004 DA - 2004// TI - Geographic patterns of (genetic, morphologic, linguistic) variation: how barriers can be detected by using Monmonier's algorithm JO - Hum Biol VL - 76 UR - https://doi.org/10.1353/hub.2004.0034 DO - 10.1353/hub.2004.0034 ID - Manni2004 ER - TY - JOUR AU - Monmonier, M. S. PY - 1973 DA - 1973// TI - Maximum-difference barriers: an alternative numerical regionalization method JO - Geogr Anal VL - 5 UR - https://doi.org/10.1111/j.1538-4632.1973.tb01011.x DO - 10.1111/j.1538-4632.1973.tb01011.x ID - Monmonier1973 ER - TY - JOUR AU - Nei, M. AU - Tajima, F. AU - Tateno, Y. PY - 1983 DA - 1983// TI - Accuracy of estimated phylogenetic trees from molecular data II Gene frequency data JO - J Mol Evol VL - 19 UR - https://doi.org/10.1007/BF02300753 DO - 10.1007/BF02300753 ID - Nei1983 ER - TY - JOUR AU - Pritchard, J. K. AU - Stephens, M. AU - Donnelly, P. PY - 2000 DA - 2000// TI - Inference of population structure using multilocus genotype data JO - Genetics VL - 155 ID - Pritchard2000 ER - TY - JOUR AU - Besnier, F. AU - Glover, K. A. PY - 2013 DA - 2013// TI - ParallelStructure: a R package to distribute parallel runs of the population genetics program STRUCTURE on multi-Core computers JO - PLoS One VL - 8 UR - https://doi.org/10.1371/journal.pone.0070651 DO - 10.1371/journal.pone.0070651 ID - Besnier2013 ER - TY - JOUR AU - Nordeide, J. T. AU - Pettersen, I. H. PY - 1998 DA - 1998// TI - Haemoglobin frequencies and vertebral numbers of cod (Gadus morhua L.) off northern Norway – test of a population structure hypothesis JO - ICES J Mar Sci VL - 55 UR - https://doi.org/10.1006/jmsc.1997.0261 DO - 10.1006/jmsc.1997.0261 ID - Nordeide1998 ER - TY - JOUR AU - Jakobsen, T. PY - 1987 DA - 1987// TI - Coastal cod in northern Norway JO - Fish Res VL - 5 UR - https://doi.org/10.1016/0165-7836(87)90042-7 DO - 10.1016/0165-7836(87)90042-7 ID - Jakobsen1987 ER - TY - JOUR AU - Berg, E. AU - Sarvas, T. AU - Harbitz, A. AU - Fevolden, S. E. AU - Salberg, A. B. PY - 2005 DA - 2005// TI - Accuracy and precision in stock separation of north-East Arctic and Norwegian coastal cod by otoliths - comparing readings, image analyses and a genetic method JO - Mar Freshw Res VL - 56 UR - https://doi.org/10.1071/MF04172 DO - 10.1071/MF04172 ID - Berg2005 ER - TY - JOUR AU - Knutsen, H. AU - Olsen, E. M. AU - Ciannelli, L. AU - Espeland, S. H. AU - Knutsen, J. A. AU - Simonsen, J. H. AU - Skreslet, S. AU - Stenseth, N. C. PY - 2007 DA - 2007// TI - Egg distribution, bottom topography and small-scale cod population structure in a coastal marine system JO - Mar Ecol Prog Ser VL - 333 UR - https://doi.org/10.3354/meps333249 DO - 10.3354/meps333249 ID - Knutsen2007 ER - TY - JOUR AU - Michalsen, K. AU - Johansen, T. AU - Subbey, S. AU - Beck, A. PY - 2014 DA - 2014// TI - Linking tagging technology and molecular genetics to gain insight in the spatial dynamics of two stocks of cod in Northeast Atlantic waters JO - ICES J Mar Sci VL - 71 UR - https://doi.org/10.1093/icesjms/fsu083 DO - 10.1093/icesjms/fsu083 ID - Michalsen2014 ER - TY - JOUR AU - Skjæraasen, J. E. AU - Meager, J. J. AU - Karlsen, Ø. AU - Hutchings, J. A. AU - Fernö, A. PY - 2011 DA - 2011// TI - Extreme spawning-site fidelity in Atlantic cod JO - ICES J Mar Sci VL - 68 UR - https://doi.org/10.1093/icesjms/fsr055 DO - 10.1093/icesjms/fsr055 ID - Skjæraasen2011 ER - TY - JOUR AU - Ciannelli, L. AU - Knutsen, H. AU - Olsen, E. M. AU - Espeland, S. H. AU - Asplin, L. AU - Jelmert, A. AU - Knutsen, J. A. AU - Stenseth, N. C. PY - 2010 DA - 2010// TI - Small-scale genetic structure in a marine population in relation to water circulation and egg characteristics JO - Ecology VL - 91 UR - https://doi.org/10.1890/09-1548.1 DO - 10.1890/09-1548.1 ID - Ciannelli2010 ER - TY - JOUR AU - Nielsen, E. E. AU - Hansen, M. M. AU - Meldrup, D. PY - 2006 DA - 2006// TI - Evidence of microsatellite hitch-hiking selection in Atlantic cod (Gadus morhua L.): implications for inferring population structure in nonmodel organisms JO - Mol Ecol VL - 15 UR - https://doi.org/10.1111/j.1365-294X.2006.03025.x DO - 10.1111/j.1365-294X.2006.03025.x ID - Nielsen2006 ER - TY - JOUR AU - Gagnaire, P. A. AU - Broquet, T. AU - Aurelle, D. AU - Viard, F. AU - Souissi, A. AU - Bonhomme, F. AU - Arnaud-Haond, S. AU - Bierne, N. PY - 2015 DA - 2015// TI - Using neutral, selected, and hitchhiker loci to assess connectivity of marine populations in the genomic era JO - Evol Appl VL - 8 UR - https://doi.org/10.1111/eva.12288 DO - 10.1111/eva.12288 ID - Gagnaire2015 ER - TY - JOUR AU - Knutsen, H. AU - André, C. AU - Jorde, P. E. AU - Skogen, M. D. AU - Thuróczy, E. AU - Stenseth, N. C. PY - 2004 DA - 2004// TI - Transport of North Sea cod larvae into the Skagerrak coastal populations JO - Proc Biol Sci VL - 271 UR - https://doi.org/10.1098/rspb.2004.2721 DO - 10.1098/rspb.2004.2721 ID - Knutsen2004 ER - TY - BOOK AU - Berg, P. R. PY - 2017 DA - 2017// TI - Genomic divergence in Atlantic cod populations PB - University of Oslo CY - Oslo ID - Berg2017 ER - TY - JOUR AU - Bigg, G. R. AU - Cunningham, C. W. AU - Ottersen, G. AU - Pogson, G. H. AU - Wadley, M. R. AU - Williamson, P. PY - 2008 DA - 2008// TI - Ice-age survival of Atlantic cod: agreement between palaeoecology models and genetics JO - Proc R Soc B Biol Sci VL - 275 UR - https://doi.org/10.1098/rspb.2007.1153 DO - 10.1098/rspb.2007.1153 ID - Bigg2008 ER - TY - JOUR AU - Carr, S. M. AU - Marshall, H. D. PY - 2008 DA - 2008// TI - Phylogeographic analysis of complete mtDNA genomes from walleye Pollock (Gadus chalcogrammus Pallas, 1811) shows an ancient origin of genetic biodiversity JO - Mitochondrial DNA VL - 19 ID - Carr2008 ER - TY - STD TI - Hutchings JA, Fraser DJ. The nature of fisheries- and farming-induced evolution. Mol Ecol. 2008;17 ID - ref93 ER - TY - JOUR AU - Nordeide, J. T. AU - Folstad, I. PY - 2000 DA - 2000// TI - Is cod lekking or a promiscuous group spawner? JO - Fish Fish VL - 1 UR - https://doi.org/10.1046/j.1467-2979.2000.00005.x DO - 10.1046/j.1467-2979.2000.00005.x ID - Nordeide2000 ER - TY - JOUR AU - Nielsen, E. E. AU - Hemmer-Hansen, J. AU - Poulsen, N. A. AU - Loeschcke, V. AU - Moen, T. AU - Johansen, T. AU - Mittelholzer, C. AU - Taranger, G. -. L. AU - Ogden, R. AU - Carvalho, G. R. PY - 2009 DA - 2009// TI - Genomic signatures of local directional selection in a high gene flow marine organism; the Atlantic cod (Gadus morhua) JO - BMC Evol Biol VL - 9 UR - https://doi.org/10.1186/1471-2148-9-276 DO - 10.1186/1471-2148-9-276 ID - Nielsen2009 ER - TY - STD TI - Case RAJ, Hutchinson WF, Hauser L, Van Oosterhout C, Carvalho GR. Macro- and micro-geographic variation in pantophysin (Pan I) allele frequencies in NE Atlantic cod Gadus morhua. Mar Ecol Prog Ser. 2005;301 ID - ref96 ER - TY - STD TI - Ruzzante DE, Taggart CT, Cook DA. Nuclear DNA basis for shelf- and bank scale population structure in Northwest Atlantic cod (Gadus morhua): Labrador to George Bank. Mol Ecol. 1998;7 ID - ref97 ER - TY - JOUR AU - Jorde, P. E. AU - Knutsen, H. AU - Espeland, S. H. AU - Stenseth, N. C. PY - 2007 DA - 2007// TI - Spatial scale of genetic structuring in coastal cod Gadus morhua and geographic extent of local populations JO - Mar Ecol Prog Ser VL - 343 UR - https://doi.org/10.3354/meps06922 DO - 10.3354/meps06922 ID - Jorde2007 ER - TY - JOUR AU - Knutsen, H. AU - Olsen, E. M. AU - Jorde, P. E. AU - Espeland, S. H. AU - André, C. AU - Stenseth, N. C. PY - 2011 DA - 2011// TI - Are low but statistically significant levels of genetic differentiation in marine fishes ‘biologically meaningful’? A case study of coastal Atlantic cod JO - Mol Ecol VL - 20 UR - https://doi.org/10.1111/j.1365-294X.2010.04979.x DO - 10.1111/j.1365-294X.2010.04979.x ID - Knutsen2011 ER - TY - JOUR AU - Barceló, C. AU - Ciannelli, L. AU - Olsen, E. M. AU - Johannessen, T. AU - Knutsen, H. PY - 2016 DA - 2016// TI - Eight decades of sampling reveal a contemporary novel fish assemblage in coastal nursery habitats JO - Glob Chang Biol VL - 22 UR - https://doi.org/10.1111/gcb.13047 DO - 10.1111/gcb.13047 ID - Barceló2016 ER - TY - JOUR AU - Tørresen, O. K. AU - Star, B. AU - Jentoft, S. AU - Reinar, W. B. AU - Grove, H. AU - Miller, J. R. AU - Walenz, B. P. AU - Knight, J. AU - Ekholm, J. M. AU - Peluso, P. PY - 2017 DA - 2017// TI - An improved genome assembly uncovers prolific tandem repeats in Atlantic cod JO - BMC Genomics VL - 18 UR - https://doi.org/10.1186/s12864-016-3448-x DO - 10.1186/s12864-016-3448-x ID - Tørresen2017 ER -