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Table 6 Summary of enriched Gene Ontology (GO) molecular function (MF) terms among total identified Pfam protein family domains

From: Genome sequencing and protein domain annotations of Korean Hanwoo cattle identify Hanwoo-specific immunity-related and other novel genes

term_ID

description

Frequencya

log10 p-value

Uniquenessb

GO:0003700

sequence-specific DNA binding transcription factor activity

5.30%

−10.6576

0.958

GO:0003712

transcription cofactor activity

1.78%

−39.8861

0.957

GO:0003824

catalytic activity

37.22%

−13.4559

0.972

GO:0004871

signal transducer activity

11.94%

−25.4318

0.927

GO:0004930

G-protein coupled receptor activity

7.87%

−27.6198

0.925

GO:0005089

Rho guanyl-nucleotide exchange factor activity

0.48%

−11.699

0.956

GO:0005216

ion channel activity

2.49%

−13.9208

0.896

GO:0015075

ion transmembrane transporter activity

5.28%

−5.7959

0.895

GO:0016773

phosphotransferase activity, alcohol group as acceptor

4.60%

−58.7447

0.771

GO:0004672

protein kinase activity

3.87%

− 14.1308

0.772

GO:0043015

gamma-tubulin binding

0.10%

−25.8539

0.878

GO:0008017

microtubule binding

1.06%

−16.4815

0.848

GO:0019001

guanyl nucleotide binding

2.48%

−25.4318

0.846

GO:0005509

calcium ion binding

3.94%

−19.0655

0.863

GO:0005515

protein binding

26.71%

−7.3665

0.92

GO:0004488

methylenetetrahydrofolate dehydrogenase (NADP+) activity

0.02%

−13.4559

0.878

GO:0003755

peptidyl-prolyl cis-trans isomerase activity

0.26%

−19.9208

0.876

GO:0003777

microtubule motor activity

0.51%

−45.6021

0.814

GO:0005544

calcium-dependent phospholipid binding

0.17%

−19.0655

0.844

GO:0042802

identical protein binding

4.77%

−25.8539

0.878

GO:0031683

G-protein beta/gamma-subunit complex binding

0.16%

−25.4318

0.883

GO:0043565

sequence-specific DNA binding

4.31%

−10.6576

0.855

GO:0016787

hydrolase activity

15.05%

−7.8861

0.841

GO:0008484

sulfuric ester hydrolase activity

0.11%

−31.7447

0.832

GO:0004181

metallocarboxypeptidase activity

0.15%

−32.6778

0.809

GO:0004222

metalloendopeptidase activity

0.79%

−15

0.79

GO:0019901

protein kinase binding

1.80%

−7.2007

0.885

GO:0008479

queuine tRNA-ribosyltransferase activity

0.02%

−34.7447

0.849

GO:0003676

nucleic acid binding

21.33%

−8.6021

0.849

GO:0005102

receptor binding

6.56%

−62.1871

0.875

GO:0004402

histone acetyltransferase activity

0.24%

−51.3372

0.812

GO:0003677

DNA binding

10.28%

−9.5376

0.843

GO:0008408

3′-5′ exonuclease activity

0.18%

−31.0655

0.827

GO:0016746

transferase activity, transferring acyl groups

1.42%

−30.9208

0.805

GO:0003723

RNA binding

7.68%

−5.9208

0.847

GO:0046872

metal ion binding

20.96%

−4.5376

0.845

GO:0004550

nucleoside diphosphate kinase activity

0.14%

−55.585

0.816

GO:0008236

serine-type peptidase activity

1.32%

−7.1739

0.793

GO:0008270

zinc ion binding

6.73%

−4.2076

0.856

GO:0004129

cytochrome-c oxidase activity

0.43%

−12.5686

0.809

GO:0003924

GTPase activity

1.03%

−25.4318

0.806

GO:0005524

ATP binding

8.83%

−14.1308

0.751

GO:0000166

nucleotide binding

14.40%

−7.3565

0.823

GO:0003810

protein-glutamine gamma-glutamyltransferase activity

0.07%

−14.7696

0.823

GO:0005543

phospholipid binding

1.33%

−16.6021

0.829

GO:0035091

phosphatidylinositol binding

0.84%

−17

0.829

  1. aFrequency represents the proportion of the specified GO term within the entire Bos Taurus species-specific Uniprot protein annotation database. Higher frequencies represent more general and common terms, while terms with a lower frequency are rare and specific
  2. bUniqueness represents whether a term is an outlier when compared semantically to the list as a whole