Table 4 Most-connected (top 5% of the sample for HO and JE, top 10% for BS) genes in the breed-specific networks, located within dystocia QTL
From: Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle
Breed | Ensembl ID | Gene name | Degree | Chra | Gene location in bp (start-end) | QTL ID |
|---|---|---|---|---|---|---|
Jersey | ENSBTAG00000027654 | EIF4EBP1 | 12 | 27 | 32951594–32973435 | 11393 |
ENSBTAG00000007602 | ITGA8 | 7 | 13 | 30340780–30527982 | 11385 | |
ENSBTAG00000009987 | ITGB3 | 7 | 19 | 46968837–47027388 | 11367 | |
Holstein | ENSBTAG00000018863 | PRIMPOL | 78 | 27 | 14110851–14163989 | 11393 |
ENSBTAG00000009565 | RASA1 | 77 | 7 | 89281002–89391377 | 2699 | |
ENSBTAG00000031632 | ADRA1A | 72 | 8 | 75257161–75364423 | 11442 | |
ENSBTAG00000021237 | DST | 71 | 23 | 3431407–3687495 | 11390 | |
ENSBTAG00000021699 | RORB | 66 | 8 | 50875138–5107931 | 11442 | |
ENSBTAG00000018669 | PLB1 | 65 | 11 | 71116627–71221929 | 11384 | |
ENSBTAG00000012005 | IFT43 | 63 | 10 | 88272302–88379899 | 11444 | |
ENSBTAG00000021811 | ANGPT4 | 62 | 13 | 60729756–60773778 | 11385 | |
ENSBTAG00000013079 | CTCFL | 55 | 13 | 59193465–59217987 | 11385 | |
Brown Swiss | ENSBTAG00000019044 | BAIAP2 | 11 | 19 | 52198618–52263294 | 11368 |
ENSBTAG00000009960 | FLOT1 | 9 | 23 | 28090029–28100113 | 11390 |