Table 3 Top 5 SNP explaining the larger proportion of genetic variance averaged across traits in Holstein (HO), Brown Swiss (BS), and Jersey (JE)
From: Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle
Breeda | SNP rs | Mapped to gene (gene name) | Chra | Location (bp) | Average PVgb |
|---|---|---|---|---|---|
HO | rs109478645 | ENSBTAG00000037537 | 18 | 57589121 | 0.148 |
rs109293774 | Â | 5 | 106178425 | 0.014 | |
rs41257416 | ENSBTAG00000005465 (NDUFA9) | 5 | 105870613 | 0.011 | |
rs42196507 | Â | 29 | 50296573 | 0.010 | |
rs111027600 | Â | 6 | 109682953 | 0.010 | |
BS | rs110914965 | ENSBTAG00000020619 (LOC504986) | 25 | 1665327 | 0.026 |
rs109557202 | ENSBTAG00000019249 (HS3ST6) | 25 | 1489008 | 0.010 | |
rs109165051 | Â | 17 | 68143571 | 0.005 | |
rs109646366 | Â | 17 | 68221835 | 0.004 | |
rs43709092 | Â | 4 | 12868626 | 0.003 | |
JE | rs43032701 | ENSBTAG00000011873 (KCNE3) | 15 | 54589414 | 0.075 |
rs41621381 | Â | 4 | 2132412 | 0.058 | |
rs110421124 | ENSBTAG00000016649 (CCND2) | 5 | 106269362 | 0.010 | |
rs110702021 | Â | 5 | 106296860 | 0.007 | |
rs109857460 | ENSBTAG00000015242 (SLC18B1) | 9 | 71939142 | 0.005 |