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Table 3 Top 5 SNP explaining the larger proportion of genetic variance averaged across traits in Holstein (HO), Brown Swiss (BS), and Jersey (JE)

From: Including gene networks to predict calving difficulty in Holstein, Brown Swiss and Jersey cattle

Breeda SNP rs Mapped to gene
(gene name)
Chra Location
(bp)
Average PVgb
HO rs109478645 ENSBTAG00000037537 18 57589121 0.148
rs109293774   5 106178425 0.014
rs41257416 ENSBTAG00000005465 (NDUFA9) 5 105870613 0.011
rs42196507   29 50296573 0.010
rs111027600   6 109682953 0.010
BS rs110914965 ENSBTAG00000020619 (LOC504986) 25 1665327 0.026
rs109557202 ENSBTAG00000019249 (HS3ST6) 25 1489008 0.010
rs109165051   17 68143571 0.005
rs109646366   17 68221835 0.004
rs43709092   4 12868626 0.003
JE rs43032701 ENSBTAG00000011873
(KCNE3)
15 54589414 0.075
rs41621381   4 2132412 0.058
rs110421124 ENSBTAG00000016649
(CCND2)
5 106269362 0.010
rs110702021   5 106296860 0.007
rs109857460 ENSBTAG00000015242
(SLC18B1)
9 71939142 0.005
  1. aChr: chromosome
  2. bPVg is the proportion to 1