Gene (bp) | Group | No. of nucleotide substitutions | No. of INDELs | π × 10−3 | h | Hd | D |
---|---|---|---|---|---|---|---|
LAX1 (648) | Total | 1 | 0 | 0.76 | 2 | 0.491 | – |
 | Indica | 1 | 0 | 0.66 | 2 | 0.425 | – |
 | Japonica | 1 | 0 | 0.14 | 2 | 0.091 | – |
 | Tong-il | 1 | 0 | 0.62 | 2 | 0.400 | – |
APO1 (1299) | Total | 12 | 3 | 2.02 | 3 | 0.533 | −0.146 |
 | Indica | 12 | 3 | 3.6 | 3 | 0.667 | 1.135 |
 | Japonica | 0 | 0 | – | – | – | – |
 | Tong-il | 2 | 1 | 0.62 | 2 | 0.400 | −0.973 |
APO2 (1170) | Total | 13 | 0 | 4.83 | 3 | 0.536 | 2.755** |
 | Indica | 13 | 0 | 4.33 | 3 | 0.602 | 1.329 |
 | Japonica | 0 | 0 | – | – | – | – |
 | Tong-il | 11 | 0 | 3.76 | 2 | 0.400 | −1.200 |
DEP1 (1281) | Total | 19 | 1 | 2.78 | 9 | 0.723 | −1.251 |
 | Indica | 9 | 0 | 2.38 | 7 | 0.854 | 0.647 |
 | Japonica | 11 | 1 | 1.49 | 3 | 0.267 | −1.320 |
 | Tong-il | 6 | 0 | 2.03 | 3 | 0.700 | −0.668 |
FON1 (2985) | Total | 14 | 0 | 2.05 | 6 | 0.764 | 2.820** |
 | Indica | 6 | 0 | 0.99 | 4 | 0.731 | 2.321* |
 | Japonica | 12 | 0 | 2 | 3 | 0.552 | 2.812** |
 | Tong-il | 10 | 0 | 1.34 | 2 | 0.400 | −1.193 |
GHD8 (903) | Total | 16 | 6 | 6.16 | 9 | 0.812 | 1.605 |
 | Indica | 15 | 6 | 4.07 | 7 | 0.866 | −0.560 |
 | Japonica | 11 | 1 | 1.54 | 3 | 0.495 | −1.920* |
 | Tong-il | 11 | 3 | 7.13 | 3 | 0.800 | 1.527 |
GN1a (1706) | Total | 8 | 4 | 1.44 | 8 | 0.790 | 0.948 |
 | Indica | 5 | 2 | 0.98 | 6 | 0.801 | 0.526 |
 | Japonica | 6 | 3 | 1.26 | 4 | 0.557 | 0.895 |
 | Tong-il | 3 | 2 | 1.06 | 2 | 0.600 | 1.573 |
HD1 (1353) | Total | 12 | 9 | 4.04 | 9 | 0.771 | 3.105** |
 | Indica | 10 | 8 | 3.07 | 6 | 0.760 | 1.503 |
 | Japonica | 11 | 4 | 4.11 | 4 | 0.686 | 3.050*** |
 | Tong-il | 12 | 4 | 4.08 | 3 | 0.700 | −1.031 |
SP1 (1881) | Total | 20 | 3 | 2.11 | 7 | 0.679 | −0.436 |
 | Indica | 7 | 0 | 1.33 | 4 | 0.696 | 0.756 |
 | Japonica | 17 | 3 | 2.44 | 5 | 0.538 | −0.105 |
 | Tong-il | 3 | 0 | 0.65 | 2 | 0.400 | −1.049 |