Table 4 Candidate genes for promising QTLs
TLs | Genes in QTL | Putative candidate genes | Gene annotation | SNPs | Tolerant hyplotype |
|---|---|---|---|---|---|
qPD18_2.1 qSES18_2.1 | 15 | LOC_Os02g4053 | MYB transcription factor | 10,224,580,840(A/G) | G |
10,224,580,869(G/T) | G | ||||
10,224,581,422(C/T) | T | ||||
10,224,582,310(C/A) | A | ||||
LOC_Os02g40730 | Ammonium transporter (OsAMT1.3) | 10,224,691,455(C/A) | A | ||
10,224,691,620(C/T) | T | ||||
10,224,691,683(T/G) | G | ||||
10,224,692,377(G/T) | G | ||||
10,224,692,615(G/A) | A | ||||
qSKD_3.1 qSNa/K0_3.1 | 18 | LOC_Os03g07450 | Homeobox associated leucine zipper | 10,303,786,888(C/T) | T |
LOC_Os03g07480 | Sucrose transporter | 10,303,802,066(T/G) | G | ||
qSNa12_4.1 | 38 | LOC_Os04g33640 | Glycosyl hydrolases gene family | 10,420,374,274(C/T) | T |
10,420,376,435(G/A) | G | ||||
LOC_Os04g33720 | Glycosyl hydrolases gene family | 10,420,414,566(A/G) | G |