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Table 4 Summary of parameters used in the PASA pipeline for the annotation comparison and minimum full length ORF size

From: An integrated and comparative approach towards identification, characterization and functional annotation of candidate genes for drought tolerance in sorghum (Sorghum bicolor (L.) Moench)

Annotation comparison

Minimum full length ORF size

Parameters

Minimum %

Parameters

Minimum value

Genomic overlap

50

Annotation version

2

Protein coding

40

Maximum utr exons

2

Length for non-full-length compare

70

Compare ID

2

Length for full-length compare

70

Trust full length status

0

Predicted protein compare

70

stomp

0

Alignment length

70

Minimum % overlap

80