IntroMap: a signal analysis based method for the detection of genomic introgressions

BMC Genomic Data

Table 1 Summary of testing IntroMap across varying LOWESS fitting frac and threshold t values

frac	t	TPR	FPR	PPV	NPV	Mean loci accuracy
0.05	0.85	0.750	0.000	1.000	0.898	0.667
0.05	0.90	0.792	0.000	1.000	0.914	0.750
0.05	0.95	0.792	0.000	1.000	0.914	0.750
0.01	0.85	0.958	0.094	0.821	0.980	0.958
0.01	0.90	0.958	0.075	0.852	0.980	0.917
0.01	0.95	0.958	0.264	0.622	0.975	0.917

Mean loci accuracy is defined as the percentage of the time that IntroMap’s loci accuracy was within 5% of the true center

ISSN: 2730-6844