Skip to main content

Table 11 Comparative analysis between inter-simple sequence repeat and start codon targeted polymorphic markers

From: Assessment of genetic diversity in Vigna unguiculata L. (Walp) accessions using inter-simple sequence repeat (ISSR) and start codon targeted (SCoT) polymorphic markers

Parameters

Markers

 

ISSR

SCoT

No of clusters from dendrogam

5

5

No of clusters from PCA

5

5

Mean major allele frequency

0.3778

0.3148

No. of observations

18

18

Total no of alleles

32

52

Mean no of alleles

9.4000

11.1667

Mean gene diversity

0.7358

0.8158

Mean PIC

0.7192

0.8009

Allele count range

1–15

1–10

Allele frequency range

0.0556–0.8333

0.0556–0.5556

Total No of polymorphic loci

70

80

Range of % polymorphic loci

94.44–100.00

94.44–100.00

Range of effective alleles, Ne

1.2887–1.7831(0.1797–0.2944)

1.7416–1.9181(0.0776–0.2426)

Nei’s genetic diversity, H

0.2112–0.4335(0.0600–0.1371)

0.4111–0.4778(0.0226–0.1168)

Shannon’s information index, I

0.3583–0.6237(0.0639–0.1759)

0.5911–0.6706(0.0233–0.1604)

Total gene diversity, Ht

0.3817–0.4957

0.4686–0.4958

Gene diversity in population Hs

0.2551–0.3482

0.4344–0.46800

Coeff of gene differentiation Gst

0.2049–0.3180

0543–0.0735

Level of gene flow, Nm

1.2497–3.5193

9.3067–419.6100

  1. PIC Polymorphic information content, Standard deviations are in parentheses