Genetic variation in populations of the earthworm, Lumbricus rubellus, across contaminated mine sites

BMC Genomic Data

Table 1 Annotation results output by blastx for SNPs considered most significantly under selection between lineages A and B

Marker	Scaffold name	Sequence length (bp)	Sequence description	Minimum e-value	Bayescan log10(PO)
1	scaffold694	35,309	lysine-specific demethylase 4A isoform X3	2.72E-55	3.2215
2	scaffold626	36,160	collagen alpha-1(I) chain-like isoform ×1	5.99E-10	2.8532
3	scaffold84914	3222	---NA---		2.8532
4	scaffold1008	32,106	syntaxin-binding 1-like isoform ×1	4.55E-16	2.7951
5	scaffold486	38,320	PREDICTED: uncharacterized protein LOC109476627	5.06E-46	2.7951
6	scaffold4171	29,021	keratin-associated 12–2-like	6.00E-08	2.7439
7	scaffold55819	5250	potassium voltage-gated channel Shab-like	3.73E-60	2.6187
8	scaffold14485	12,918	ubiquitin thioesterase	4.87E-11	2.5838
9	scaffold14102	13,094	hypothetical protein HELRODRAFT_80699	2.16E-05	2.5215
10	scaffold20298	10,806	probable G- coupled receptor No9	2.07E-67	2.4185

The e-value refers to the expected number of random hits for an alignment by blastx, with lower values being more significant matches. Evidence for selection is demonstrated by the log posterior odds scores (PO), with higher scores demonstrating a better likelihood of selection than no selection. All SNPs are considered as candidates under selection by Bayescan and PCAdapt. A complete table can be found in Additional file 3

ISSN: 2730-6844