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Table 1 Loci (PGSC0003DMG*********) from the reference genome [28, 43] analyzed in 112 Solanum tuberosum Group Phureja accessions

From: Correction to: Novel SNP markers in InvGE and SssI genes are associated with natural variation of sugar contents and frying color in Solanum tuberosum Group Phureja

Gene Acronym

Locus

Chr.

Primer Sequences 5′-3’

Ta (°C)

Amplicon

No. SNPs Scored

(GenBank Accesion No.)

size (bp)

(Scored previously)e

Stp23 (PHO1)a

(D00520)

PGSC0003DMG400007782

III

*f-cagatatgttacatactctacc

r-tcattagtcacaactttatcgg

59

963

4 (0)

StpL (PHO1)a

(X73684)

PGSC0003DMG400028382

V

*f-ttacattgcacaagcacaagc

r-gtgtacatacaatactctatcc

57

982

14 (1) [67]

SssI (Y10416)

PGSC0003DMG402018552

III

f-aacaataggaatttaccataacc

*r-atattcccaaacaaaacagagc

57

970

12 (0)

InvGE (INV-cw)a

(AJ133765)

PGSC0003DMG400008943

IX

f-caattcttcgattcttcatagg

*r-acagcacctatgtattataatgg

57

798

9 (8) [39]

Pain1 (INV)a

(X70368)

PGSC0003DMG400013856

III

f-catacattacactatagatcc

*r-aattgaagcagatcatgtagg

56

926

5 (2) [39,40]

 

f-caaaatgaatacatattaagaggb

56

707

4 (0)

 

*r-cttaagcagttgcttagagc

   

UGPase (D00667)

PGSC0003DMG401013333

XI

f-atgatgttctccacttaaaagc

56

805

11 (1)[42]

 

*r-tttcagattttcagaagagagg

   
 

*f-tgattaacgatactatacgtcc

56

931

12 (1) [42]

 

r-ttaaaacttccttatactatatgg

   

GWD (Y09533)

PGSC0003DMG400007677

V

f-ttctgttatctacttagttacg

56

992

5 (3) [7,41]

 

*r-gttttatatcttgcttctttgg

   

BMY-8/2 (AF393847)

PGSC0003DMG400001855

VIII

f-gctactggagcatggtgacagac

57

560

9 (9) [5]

 

*r-ttacatagaggtctgtcctgcttgag

   

PWD (AY747068)

PGSC0003DMG400016613

IX

*f-ggtctgatgatctatctgattgcc

57

871

16 (16) [7,41]

 

r-cgacatcttgaggagaaccaaactt

   

LapN (X77015)

PGSC0003DMG400007831

XII

f-gcttcctggtcttggctcd

60

985

8 (3) [37]

 

*r-gataggcatacgcagccaggtcagaaatcaa

   
  1. Chr, chromosome; Ta, annealing temperature
  2. * Primer used for amplicon sequencing
  3. a These parenthesis include the alternative acronyms used in the starch-sugar interconversion pathway scheme adapted by Schreiber et al. [7]
  4. b From a region downstream of the Pain1 candidate gene
  5. c From Schreiber et al. [7]
  6. d From Fischer et al. [37]
  7. e The studies where the SNPs or the related amino acid changes were previously reported in tetraploid potatoes are indicated
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BMC Genomic Data

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