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Table 1 PCR amplification bands in RCC, BSB and 4nF1

From: Hox genes reveal genomic DNA variation in tetraploid hybrids derived from Carassius auratus red var. (female) × Megalobrama amblycephala (male)

Species

Locus

Size (bp)

Exon1 (bp)

Intron (bp)

Exon 2 (bp)

GenBank accession no.

RCC

HoxA4ai

1181

89-500

501-974

975-1181

JX282274

HoxA4aii

1184

89-500

501-977

978-1184

JX282275

HoxA9ai

867

1-381

382-670

671-867

JX282276

HoxA9aii

819

1-381

382-622

623-819

JX282277

HoxA2bi

1486

1-314

315-901

902-1486

JX282278

HoxA2bii

1448

1-314

315-863

864-1448

JX282279

HoxD4ai

960

1-315

316-735

736-960

JX282280

HoxD4aii

952

1-315

316-719

728-952

JX282281

BSB

HoxA4a

1188

89-500

501-981

982-1188

JX282282

HoxA9a

879

1-381

382-682

683-879

JX282283

HoxA2b

1479

1-311

312-894

895-1479

JX282284

HoxD4a

911

1-306

307-686

687-911

JX282285

4nF1

HoxA4ai

1183

89-500

501-976

977-1183

JQ901468

HoxA4aii

1169

89-500

501-962

963-1169

JX282286

HoxA4aiii

1177

89-500

501-970

971-1177

JX282287

HoxA9ai

867

1-381

382-670

671-867

JX282288

HoxA9aii

817

1-381

382-620

621-817

JX282289

HoxA9aiii

863

1-381

382-666

667-863

JX282290

HoxA2bi

1486

1-314

315-901

902-1486

JX282291

HoxA2bii

1448

1-314

315-863

864-1448

JX282292

HoxA2biii

1475

1-314

315-890

891-1475

JX282293

HoxA11bi

1251

3-590

591-1153

1154-1251

JX282294

HoxA11bii

1411

3-590

591-1313

1314-1411

JX282295

HoxA11biii

1437

3-590

591-1339

1340-1437

JX282296

HoxB1bi

733

1-477

478-567

568-733

JX282297

HoxB1bii

734

1-477

478-568

569-734

JX282298

HoxB1biii

731

1-477

478-565

566-731

JX282299

HoxB5bi

1196

1-561

562-990

991-1196

JX282300

HoxB5bii

1195

1-561

562-989

990-1196

JX282301

HoxB5biii

1190

1-561

562-984

985-1190

JX282302

HoxB6bi

807

1-169

170-667

668-807

JX282303

HoxB6bii

819

1-169

170-679

680-819

JX282304

HoxB6biii

812

1-169

170-672

673-819

JX282304

HoxC4ai

1176

1-410

411-935

936-1176

JX282306

HoxC4aii

1173

1-410

411-932

933-1173

JX282307

HoxC4aiii

1169

1-410

411-928

929-1169

JX282308

HoxC4a-1

1179

1-410

411-938

939-1179

JX282309

HoxD4ai

960

1-315

316-735

736-960

JX282310

HoxD4aii

952

1-315

316-719

728-952

JX282311

HoxD4aiii Ψ

942

-

-

-

JX282312

HoxD9a Ψ

897

-

-

-

JX282313

HoxD10a Ψ

1481

-

-

-

JX282314

HoxD10aii

1554

1-589

590-1324

1325-1554

JX282315

HoxD10aiii

1495

1-592

593-1265

1266-1495

JX282316

  1. Ψ denotes a pseudogene